Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq8 89.7 4e-13 seq281 86.0 4e-12 >seq8 Length=38990876 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA---AG 27845 |||||| || |||||||||||||| | || ||||||||||| |||| | || || Sbjct 11065684 AATGCAGATCTTTGTGAAAACTCTCATGGGTAAATGTATTACCCTTGAGCTAGAGCCCAG 11065625 Query 27846 CACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | | || || | ||| ||||| || ||| ||||||||||| | || || Sbjct 11065624 GAAC-ACCATTGAGAAT--GTCAAGGCGAAGATACAAGACAAAGAAGGCATCCCTCCTGA 11065568 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 ||||| | || || ||||| || ||||| |||| || ||||| | | |||| | || Sbjct 11065567 CCAGCAGAGATTGATCTTTGCTGGGAAACAGCTGGAAGATGAACGTACCCTGTCTAACTA 11065508 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| ||||| ||| |||| ||||| || |||| | || || Sbjct 11065507 CAACATCCAGAAAGAATCCACCCTGCACTTGGTCCGGCATTTGAGCGGAGG 11065457 >seq281 Length=3633602 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || |||||||||||||| || || ||| |||||| |||| || || || Sbjct 126707 AATGCAGATCTTTGTGAAAACTCTCACGGGTAAAACTATTACCCTTGAGGTTGAGCCCAG 126648 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| ||||| ||| || ||||||||||| | || || Sbjct 126647 TGACACCATTGAGAAT--GTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCTGAC 126590 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | || || ||||| || |||||| |||| || | || | |||| |||||| Sbjct 126589 CAGCAGAGATTGATCTTTGCTGGGAAACAACTGGAAGATGGCCGTACTCTGTCTGATTAC 126530 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| ||| |||| |||| | ||| || | || || Sbjct 126529 AACATCCAGAAAGAATCCACCCTGCACCTGGTCCTTCGTCTGAGAGGGGG 126480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355773490003500