Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq20 102 7e-17
seq26 100 2e-16
seq451 98.7 9e-16
seq53 98.7 9e-16
seq31 89.7 4e-13
seq64 87.8 2e-12
seq363 86.0 5e-12
>seq20
Length=29555478
Score = 102 bits (112), Expect = 7e-17
Identities = 148/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| |||||| || || || ||||| | || || | | | || ||||||
Sbjct 3969878 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGAGGCCACCCTCCAGCTGT 3969937
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| | ||||||||| |||||||||||||||| ||| | | ||| ||||| ||||||
Sbjct 3969938 TTACACGCAAATATCAGACGCTGCTGGTCGG-GGGGATACCCTCCTTGTCTTGGATTTTG 3969996
Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261
||||| || | | ||||| || | |||||| || | ||||| | || ||| ||
Sbjct 3969997 GCTTTGACACTCTCGATGGTATCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCATC 3970056
Query 39262 AGCGTTTTAACAAAGATTTGCATCTTTA 39289
|| || || |||||||| | ||||| ||
Sbjct 3970057 AGGGTCTTCACAAAGATCTCCATCTCTA 3970084
>seq26
Length=26594169
Score = 100 bits (110), Expect = 2e-16
Identities = 152/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCG----TTCGT 39130
||||| || || ||| |||||| || ||||| || || | || || || | |||
Sbjct 3632837 CACCAGGTGCAGGGTGGACTCTTTGTGGATATTGTAGTCTGAGAGAGTGCGGCTATCCGT 3632896
Query 39131 CATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGT 39190
|| ||||||| |||||||| || |||||||||||||| ||||| | | ||| ||||
Sbjct 3632897 CA----GCTGTTTACCCGCAAAAATCAGACGCTGCTGGTCAGTGGGGATACCCTCCTTGT 3632952
Query 39191 CCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATAC 39250
| |||||| ||||| || | | || || || | |||||| || | |||||
Sbjct 3632953 CTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATGG 3633012
Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || ||||||| || || |||||||| ||| |||
Sbjct 3633013 TCTTGTCCGTCAGGGTCTTCACAAAGATCTGCCTCT 3633048
>seq451
Length=1225386
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || ||| |||||| | || || || || | || || || | || ||
Sbjct 1000164 CACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTC 1000223
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||||| |||||||| || |||||||||||||| | ||| | | ||| |||||
Sbjct 1000224 CAGCTGTTTACCCGCAAAAATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTG 1000283
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|||||| ||||| || | | || || || | |||||| || | || || | ||
Sbjct 1000284 GATTTTGGCTTTGACATTCTCTATGGTGTCACTAGGCTCCACCTCAAGAGTAATGGTCTT 1000343
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| ||||| || || |||||||| |||||||
Sbjct 1000344 GCCTGTCAGGGTCTTCACAAAGATCTGCATCT 1000375
>seq53
Length=19262973
Score = 98.7 bits (108), Expect = 9e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|||| ||||| || || ||| ||| || || || || || || | || || || |
Sbjct 11236661 CGTAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 11236720
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| || |||||||| || ||||| || |||||||||||||| | ||| | | ||| |||
Sbjct 11236721 TCCTCCAGCTGTTTACCTGCAAAAATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 11236780
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249
|| |||||| ||||| || | | || || || | |||||| || | |||||
Sbjct 11236781 TCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATG 11236840
Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || || ||||| | || |||||||| |||||||
Sbjct 11236841 GTCTTGCCTGTCAGGGCCTTCACAAAGATCTGCATCT 11236877
>seq31
Length=26307832
Score = 89.7 bits (98), Expect = 4e-13
Identities = 141/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 39085 AGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTG 39144
|| ||| |||||| || || || || || | || | || | || || ||||||||
Sbjct 23303259 AGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAATGCGGACATCCTCCAGCTGTTTA 23303318
Query 39145 CCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT 39204
| |||||| || |||||||||||||| ||||| | | ||| ||||| |||||| |
Sbjct 23303319 CTCGCAAAAATCAGACGCTGCTGGTCAGTGGGGATACCCTCCTTGTCTTGGATTTTGGCT 23303378
Query 39205 TTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGC 39264
|||| || | || || || | |||||| || | || || || ||||||||
Sbjct 23303379 TTGACATTCTGGATGGTGTCACTAGGCTCCACCTCAAGGGTAATGGGCTTGCCCGTCAGG 23303438
Query 39265 GTTTTAACAAAGATTTGCATCT 39286
|| || |||||||| |||||||
Sbjct 23303439 GTCTTCACAAAGATCTGCATCT 23303460
>seq64
Length=17089795
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152
|||||| | || || ||||| | ||| || || | || || ||||| ||||| |||||
Sbjct 15771229 CTCTTTCTAGATGTTGTAATCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAA 15771170
Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212
||||| | ||||||||| | ||| | || || || ||| ||| || |||| |
Sbjct 15771169 GATAAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 15771110
Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272
| | | || || || | |||||| ||| ||||| | || || ||||| | || ||
Sbjct 15771109 CTCGATGGTGTCACTAGGCTCCACTTCCTTAGTGATGGTCTTGCCAGTCAGGATCTTTAC 15771050
Query 39273 AAAGATTTGCATCTTTAC 39290
|||||||||||| || ||
Sbjct 15771049 AAAGATTTGCATTTTGAC 15771032
>seq363
Length=2227322
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/214 (69%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132
||||||| || || ||| |||||| || || || | || | || || | |||
Sbjct 312797 AACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTCGTCTGAGAGAGTGTGGCAGTCC 312856
Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192
|| | |||||| ||| | || || |||| |||||||| | ||| | || || ||||||
Sbjct 312857 TCCAACTGTTTACCCACGAAAATCAGACACTGCTGGTTAGGGGGTATGCCCTTTTTGTCT 312916
Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252
|||||| ||||| || | ||||| || |||||||| || ||||| |
Sbjct 312917 TGGATTTTGCCTTTGACATTCTTGATGGTATCACT-GACTCCACCTCAGGAGTGATGGTC 312975
Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|| | |||||| || || ||||||||||||||||
Sbjct 312976 TTGCTCGTCAGGGTCTTCACAAAGATTTGCATCT 313009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429438280716500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |