Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq20 102 7e-17 seq26 100 2e-16 seq451 98.7 9e-16 seq53 98.7 9e-16 seq31 89.7 4e-13 seq64 87.8 2e-12 seq363 86.0 5e-12 >seq20 Length=29555478 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| |||||| || || || ||||| | || || | | | || |||||| Sbjct 3969878 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGAGGCCACCCTCCAGCTGT 3969937 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || | ||||||||| |||||||||||||||| ||| | | ||| ||||| |||||| Sbjct 3969938 TTACACGCAAATATCAGACGCTGCTGGTCGG-GGGGATACCCTCCTTGTCTTGGATTTTG 3969996 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 ||||| || | | ||||| || | |||||| || | ||||| | || ||| || Sbjct 3969997 GCTTTGACACTCTCGATGGTATCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCATC 3970056 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || || |||||||| | ||||| || Sbjct 3970057 AGGGTCTTCACAAAGATCTCCATCTCTA 3970084 >seq26 Length=26594169 Score = 100 bits (110), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCG----TTCGT 39130 ||||| || || ||| |||||| || ||||| || || | || || || | ||| Sbjct 3632837 CACCAGGTGCAGGGTGGACTCTTTGTGGATATTGTAGTCTGAGAGAGTGCGGCTATCCGT 3632896 Query 39131 CATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGT 39190 || ||||||| |||||||| || |||||||||||||| ||||| | | ||| |||| Sbjct 3632897 CA----GCTGTTTACCCGCAAAAATCAGACGCTGCTGGTCAGTGGGGATACCCTCCTTGT 3632952 Query 39191 CCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATAC 39250 | |||||| ||||| || | | || || || | |||||| || | ||||| Sbjct 3632953 CTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATGG 3633012 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || ||||||| || || |||||||| ||| ||| Sbjct 3633013 TCTTGTCCGTCAGGGTCTTCACAAAGATCTGCCTCT 3633048 >seq451 Length=1225386 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| |||||| | || || || || | || || || | || || Sbjct 1000164 CACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTC 1000223 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| |||||||| || |||||||||||||| | ||| | | ||| ||||| Sbjct 1000224 CAGCTGTTTACCCGCAAAAATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTG 1000283 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | | || || || | |||||| || | || || | || Sbjct 1000284 GATTTTGGCTTTGACATTCTCTATGGTGTCACTAGGCTCCACCTCAAGAGTAATGGTCTT 1000343 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || ||||| || || |||||||| ||||||| Sbjct 1000344 GCCTGTCAGGGTCTTCACAAAGATCTGCATCT 1000375 >seq53 Length=19262973 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| ||||| || || ||| ||| || || || || || || | || || || | Sbjct 11236661 CGTAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 11236720 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || |||||||| || ||||| || |||||||||||||| | ||| | | ||| ||| Sbjct 11236721 TCCTCCAGCTGTTTACCTGCAAAAATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTG 11236780 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || |||||| ||||| || | | || || || | |||||| || | ||||| Sbjct 11236781 TCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATG 11236840 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || ||||| | || |||||||| ||||||| Sbjct 11236841 GTCTTGCCTGTCAGGGCCTTCACAAAGATCTGCATCT 11236877 >seq31 Length=26307832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 39085 AGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTG 39144 || ||| |||||| || || || || || | || | || | || || |||||||| Sbjct 23303259 AGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAATGCGGACATCCTCCAGCTGTTTA 23303318 Query 39145 CCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGT 39204 | |||||| || |||||||||||||| ||||| | | ||| ||||| |||||| | Sbjct 23303319 CTCGCAAAAATCAGACGCTGCTGGTCAGTGGGGATACCCTCCTTGTCTTGGATTTTGGCT 23303378 Query 39205 TTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGC 39264 |||| || | || || || | |||||| || | || || || |||||||| Sbjct 23303379 TTGACATTCTGGATGGTGTCACTAGGCTCCACCTCAAGGGTAATGGGCTTGCCCGTCAGG 23303438 Query 39265 GTTTTAACAAAGATTTGCATCT 39286 || || |||||||| ||||||| Sbjct 23303439 GTCTTCACAAAGATCTGCATCT 23303460 >seq64 Length=17089795 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| | || || ||||| | ||| || || | || || ||||| ||||| ||||| Sbjct 15771229 CTCTTTCTAGATGTTGTAATCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAA 15771170 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| | ||||||||| | ||| | || || || ||| ||| || |||| | Sbjct 15771169 GATAAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATT 15771110 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || || || | |||||| ||| ||||| | || || ||||| | || || Sbjct 15771109 CTCGATGGTGTCACTAGGCTCCACTTCCTTAGTGATGGTCTTGCCAGTCAGGATCTTTAC 15771050 Query 39273 AAAGATTTGCATCTTTAC 39290 |||||||||||| || || Sbjct 15771049 AAAGATTTGCATTTTGAC 15771032 >seq363 Length=2227322 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||| || || ||| |||||| || || || | || | || || | ||| Sbjct 312797 AACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTCGTCTGAGAGAGTGTGGCAGTCC 312856 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || | |||||| ||| | || || |||| |||||||| | ||| | || || |||||| Sbjct 312857 TCCAACTGTTTACCCACGAAAATCAGACACTGCTGGTTAGGGGGTATGCCCTTTTTGTCT 312916 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 |||||| ||||| || | ||||| || |||||||| || ||||| | Sbjct 312917 TGGATTTTGCCTTTGACATTCTTGATGGTATCACT-GACTCCACCTCAGGAGTGATGGTC 312975 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | |||||| || || |||||||||||||||| Sbjct 312976 TTGCTCGTCAGGGTCTTCACAAAGATTTGCATCT 313009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429438280716500