Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq340 89.7 2e-13 seq103 84.2 8e-12 >seq340 Length=2708488 Score = 89.7 bits (98), Expect = 2e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 52112 GGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTG 52171 |||| || ||||||||||| | || | ||| || ||||| | | ||| |||| || || Sbjct 2584898 GGCGCTGCCTCCCTGCCATGCCCTTTGCCAGTTTTATGTGGTAAACGGTGAGCTGTCCTG 2584839 Query 52172 CCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTA 52231 || |||| |||||||| | ||||| |||||| || || || |||||||||||||| Sbjct 2584838 TCAGCTGTACCAGCGGTCAGGACACATGGGCTTGGGGGTGCCTTTCAACATTGCCAGCTA 2584779 Query 52232 TTCCTTGCTGACGCATCTGATTGC 52255 ||| ||| || | ||||||| Sbjct 2584778 CGCCTGGCTTACCTACATGATTGC 2584755 >seq103 Length=11749778 Score = 84.2 bits (92), Expect = 8e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 |||||| || ||||||||||| | || | ||| |||||||| | | ||| |||| || Sbjct 7749955 ATGGCGCTGCCTCCCTGCCATGCCCTTTGCCAGTTCTATGTGGTAAATGGTGAGCTGTCC 7749896 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 || | |||| ||| |||| | |||||| | |||| || || || |||||||||||| Sbjct 7749895 TGTTAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGGGTGCCTTTCAACATTGCCAGC 7749836 Query 52230 TATTCCTTGCTGAC 52243 || || |||| || Sbjct 7749835 TACGCCCTGCTCAC 7749822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190049723505000