Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq210 161 1e-34 seq81 86.0 9e-12 >seq210 Length=5656762 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||| ||| ||||||||||||||||||||| || ||||| || || Sbjct 3400135 GTCTGGAACAAACGCTCATCATCCCATTCTGGATGTTCTTGTTTAAGCACATCACATACT 3400076 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| ||||| || || || |||||||| || ||||| ||||| ||||| Sbjct 3400075 CTGTTATGTTCCCGAAGCCAAATTGTTGCATACATCATCAGACCAGGCACCAGACCAAAG 3400016 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 ||||||| || ||||| | | | || || || || | || || |||||||| | Sbjct 3400015 ACCTCTTGCCCCACAGCAAACTGAAGGTGCTCAGGGACATGAGGGGGGTAGATCATCTCT 3399956 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 3399955 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATGATCT 3399907 Score = 125 bits (138), Expect = 1e-23 Identities = 213/309 (69%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8278 ATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTG 8337 ||| ||||| | ||| || | | ||||| || || ||||| | |||| |||||||| Sbjct 3401968 ATCTGGAACACTGAATGCAGTATAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTG 3401909 Query 8338 AATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCA 8397 || | || | |||| ||| || || || ||||| || || ||||| |||||||| Sbjct 3401908 TATTGAGGCTGTGTTGAGGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCA 3401849 Query 8398 GTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457 ||| || || ||||| || ||||||| ||||| | ||||||||| || || | Sbjct 3401848 GTAGTTAGGAGAACAGATAGGATTACCCATGAGTCCTTTCAAGGAGAACGGTGCTCCTAG 3401789 Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517 || | || ||||||| || ||||| | ||||| |||||||| |||| | | | Sbjct 3401788 TTCTACCATAGTCTCACCAAAAATGGCATCTGGACGAGGCTTTTCAACCAGAAGGGCAGG 3401729 Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577 ||| | ||||| ||| || | || || || || ||| | || || || || ||||| Sbjct 3401728 GTATAACTCCATAGCATCAATATCACCATACAGTGCCTCTAACTCTGCTGCCATTTCCTT 3401669 Query 8578 TTCTCCTGT 8586 |||||||| Sbjct 3401668 CTCTCCTGT 3401660 Score = 109 bits (120), Expect = 8e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| || |||||||| ||||| || || || || ||| ||| | || Sbjct 3398789 TCTTACCCCATGGCCTAGTCCTTTGGTGAAAGCTGGTCCACGTTTATGATCTGTCTTGAA 3398730 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | ||| |||||||||||||| Sbjct 3398729 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 3398670 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || | || | || | || ||| ||||||||||| Sbjct 3398669 AGGGATAAACTTTCTTCTCAGGAGAAATTTTTCCACAA 3398632 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| ||||| |||||||| || || || ||||| || ||||| || || | || Sbjct 3398209 ACCTTTTACCCCCACAGGAGTGGGGCAGTCATGAGGGACAGGAGGAAGGGCTCTGGTATA 3398150 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||| || || | |||||||||||| ||| | |||| | || || | || Sbjct 3398149 ATAGGAGAGGTTAGAATAGGCTTCCCAGCTTTTGTAGCCATAGTGAACATTATAAGTTGG 3398090 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || |||||||||| ||||| |||| Sbjct 3398089 TGGACTCTCAATCAAATGTGATCTTGCTGA 3398060 >seq81 Length=13573838 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| ||||| | || |||||| | || || || |||| | ||| | | Sbjct 542124 CTCACCCCATGGCCCAGGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 542181 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | || ||||| || |||||||| |||||||||||||||| | ||| ||||| || |||| Sbjct 542182 AGAATTGGTGAGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTAGTGCCTTGAGGAT 542241 Query 9768 CGGGAGTGAAGGTCCTCC 9785 | || |||| |||||| Sbjct 542242 CAGGTATGAACTTCCTCC 542259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716693100320000