Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq210 161 1e-34
seq81 86.0 9e-12
>seq210
Length=5656762
Score = 161 bits (178), Expect = 1e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| |||| ||| ||||||||||||||||||||| || ||||| || ||
Sbjct 3400135 GTCTGGAACAAACGCTCATCATCCCATTCTGGATGTTCTTGTTTAAGCACATCACATACT 3400076
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||| ||||||| ||||| || || || |||||||| || ||||| ||||| |||||
Sbjct 3400075 CTGTTATGTTCCCGAAGCCAAATTGTTGCATACATCATCAGACCAGGCACCAGACCAAAG 3400016
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
||||||| || ||||| | | | || || || || | || || |||||||| |
Sbjct 3400015 ACCTCTTGCCCCACAGCAAACTGAAGGTGCTCAGGGACATGAGGGGGGTAGATCATCTCT 3399956
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
|||| |||||||| | ||| |||||||| || || ||||| ||||
Sbjct 3399955 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATGATCT 3399907
Score = 125 bits (138), Expect = 1e-23
Identities = 213/309 (69%), Gaps = 0/309 (0%)
Strand=Plus/Minus
Query 8278 ATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTG 8337
||| ||||| | ||| || | | ||||| || || ||||| | |||| ||||||||
Sbjct 3401968 ATCTGGAACACTGAATGCAGTATAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTG 3401909
Query 8338 AATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCA 8397
|| | || | |||| ||| || || || ||||| || || ||||| ||||||||
Sbjct 3401908 TATTGAGGCTGTGTTGAGGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCA 3401849
Query 8398 GTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457
||| || || ||||| || ||||||| ||||| | ||||||||| || || |
Sbjct 3401848 GTAGTTAGGAGAACAGATAGGATTACCCATGAGTCCTTTCAAGGAGAACGGTGCTCCTAG 3401789
Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517
|| | || ||||||| || ||||| | ||||| |||||||| |||| | | |
Sbjct 3401788 TTCTACCATAGTCTCACCAAAAATGGCATCTGGACGAGGCTTTTCAACCAGAAGGGCAGG 3401729
Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577
||| | ||||| ||| || | || || || || ||| | || || || || |||||
Sbjct 3401728 GTATAACTCCATAGCATCAATATCACCATACAGTGCCTCTAACTCTGCTGCCATTTCCTT 3401669
Query 8578 TTCTCCTGT 8586
||||||||
Sbjct 3401668 CTCTCCTGT 3401660
Score = 109 bits (120), Expect = 8e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| || |||||||| ||||| || || || || ||| ||| | ||
Sbjct 3398789 TCTTACCCCATGGCCTAGTCCTTTGGTGAAAGCTGGTCCACGTTTATGATCTGTCTTGAA 3398730
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| || ||| |||| || |||||||| | ||| ||||||||||||||
Sbjct 3398729 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 3398670
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806
|| | || | || | || ||| |||||||||||
Sbjct 3398669 AGGGATAAACTTTCTTCTCAGGAGAAATTTTTCCACAA 3398632
Score = 86.0 bits (94), Expect = 9e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969
|||||| ||||| |||||||| || || || ||||| || ||||| || || | ||
Sbjct 3398209 ACCTTTTACCCCCACAGGAGTGGGGCAGTCATGAGGGACAGGAGGAAGGGCTCTGGTATA 3398150
Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029
||||||||| || || | |||||||||||| ||| | |||| | || || | ||
Sbjct 3398149 ATAGGAGAGGTTAGAATAGGCTTCCCAGCTTTTGTAGCCATAGTGAACATTATAAGTTGG 3398090
Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| || |||||||||| ||||| ||||
Sbjct 3398089 TGGACTCTCAATCAAATGTGATCTTGCTGA 3398060
>seq81
Length=13573838
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/138 (75%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707
|| |||||||| ||||| | || |||||| | || || || |||| | ||| | |
Sbjct 542124 CTCACCCCATGGCCCAGGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 542181
Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767
| || ||||| || |||||||| |||||||||||||||| | ||| ||||| || ||||
Sbjct 542182 AGAATTGGTGAGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTAGTGCCTTGAGGAT 542241
Query 9768 CGGGAGTGAAGGTCCTCC 9785
| || |||| ||||||
Sbjct 542242 CAGGTATGAACTTCCTCC 542259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716693100320000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |