Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq78 111 1e-19
seq104 107 2e-18
seq13262 105 6e-18
seq219 98.7 9e-16
seq81 87.8 2e-12
seq7 86.0 6e-12
seq346 82.4 7e-11
seq281 82.4 7e-11
seq40 82.4 7e-11
>seq78
Length=14163838
Score = 111 bits (122), Expect = 1e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701
|| ||||| | |||||||||||| ||| ||| ||||| ||||| ||||| ||||| |||
Sbjct 4568731 CGCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTG 4568790
Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTC 41761
|| | || || |||| || || || || ||||| ||||||| ||| | | | | | |
Sbjct 4568791 CGGCCATCCTCCTGCTGTTTACCCGCAAAAATCAGACGCTGTTTGTCAGGGAGGATACCC 4568850
Query 41762 TCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACC 41821
| |||||| |||||| || | | | ||||| || | |||||||||
Sbjct 4568851 TACTTGTCTTGGATTTTGGCTTTGATATTCTGGATGGTGTCACTGGGCTCCACCTCAGGA 4568910
Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || |||||||| ||||| || || ||||||||
Sbjct 4568911 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4568951
>seq104
Length=11152936
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
|| ||| || | ||||| | || || ||||| || ||| ||||| ||||| || ||
Sbjct 9999598 ACAGCCACCCCTCAGACGAAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAATC 9999539
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || ||||| | || || ||||||||||| || || || || | ||| ||||| |
Sbjct 9999538 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 9999479
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811
||||| || ||||||||| ||| || ||| | | | ||||| || | |||
Sbjct 9999478 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 9999419
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| |||| || || || || | ||||| |||||||| || |||||||| ||
Sbjct 9999418 CACTTCCAGGGTGATGGTCTTGACAGTCAGGGTCTTTACAAAGATCTGCATTTT 9999365
>seq13262
Length=12524
Score = 105 bits (116), Expect = 6e-18
Identities = 157/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701
|| ||||| | |||||| ||||| ||| ||| |||| ||||||||||| ||||| |||
Sbjct 9175 CGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTAGATGTTATAGTCTGAGAGAGTG 9116
Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTC 41761
| | || || ||||| || || | || ||||| ||||| ||||| | ||| | | |
Sbjct 9115 CAGCCATCCTCCAGCTGTTTACCCACAAAAATCAGACGCTGCTGGTCAGGGGGGAGACCC 9056
Query 41762 TCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACC 41821
||||| | || ||| |||| ||| | ||||| || | || |||||| |
Sbjct 9055 TCCTTAT-TTTGGACTTTGGCTT---TGACATTATGGTGTCACTAGGCTTCACCTCAAGA 9000
Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || |||||||| ||||| || || ||||||||
Sbjct 8999 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 8959
>seq219
Length=5435593
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| ||| | ||| | |||| | ||||| ||| ||| ||||| ||||| |||| |
Sbjct 4753213 CGCCACCGTGCAGATGCCGCACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTG 4753154
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
|||| || | | || || ||||| || || || || ||||| |||| ||||| | ||
Sbjct 4753153 AGAGAATGGGGCCATCCTCCAGCTGTTTACCTGCAAAAATCAGATGCTGCTGGTCAGGGG 4753094
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCC 41812
| |||||||||| | || |||| |||| || | | |||||| || | ||||
Sbjct 4753093 AGATCCTCTCCTTGT-CTTGGATTTTGGCTTTGACATTCTCGATAGTGTCACTGGGCTCC 4753035
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGC 41860
||||| | || || || || ||| |||| ||||| || ||| |||||
Sbjct 4753034 ACCTCAAGAGTGATGGTCTTGCCCATCAGAGTCTTCACAAAATTCTGC 4752987
>seq81
Length=13573838
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/233 (69%), Gaps = 20/233 (9%)
Strand=Plus/Plus
Query 41639 CCGCGTAGACGTAACAC----CAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||| ||||||| ||| ||| ||||| ||| ||||||||| ||||| ||||||||
Sbjct 12460570 CCGCGCAGACGTAGCACGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 12460629
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| |||| | || || ||||| || || | || ||||| | ||| ||||| | | |
Sbjct 12460630 GAGAGTGCTGCCATCCTCCAGCTGTTTACCCACAAAAATCAGACACTGCTGGTCAGGGCG 12460689
Query 41755 AACGCTCTCCTTGTCCATGATTT----TTTG-CTTCAACGACGACACAGTGTCGCTCGAC 41809
| ||||||||| ||||| |||| | | ||| | ||||| || | |
Sbjct 12460690 GATATCCTCCTTGTCTTGGATTTGGGCTTTGACATTCTCGATG-----GTGTCACTGGGC 12460744
Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| | || || ||| |||| ||||| || || ||||||||
Sbjct 12460745 TCCACCTC------AAGAGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 12460791
>seq7
Length=39982324
Score = 86.0 bits (94), Expect = 6e-12
Identities = 162/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||||| || || ||| ||| ||||| ||||| || || ||
Sbjct 19177370 GCCACCACGCAGACGCAGCACCAGCTGTAGGGTGGACTCTTTCTGGATGTTGTAATCTGA 19177311
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA-TCAGGCGCTGTTGGTCCGCGG 41753
||| ||| | | || || |||| || || || || | |||| |||| | ||| | ||
Sbjct 19177310 GAGAGTGTGGCCATCCTCCAGCTATTTACCAGCAAAAAATCAGATGCTGCTAGTCAGGGG 19177251
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCC 41812
|| || |||||||| |||||| |||| || || | |||| || | ||||
Sbjct 19177250 GATACCT-TCCTTGTCTTGGATTTTG-GCTTTGACATTCTCAATGGTGTCACTGGGCTCC 19177193
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| | | | || || || |||| |||||||| ||||||||||| ||
Sbjct 19177192 ACCTCAAGAGCAGTGGTCTTGTCCATCAGGGTCTTTACAAAAATCTGCATCTT 19177140
>seq346
Length=2583767
Score = 82.4 bits (90), Expect = 7e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767
|| || ||||||||||| || || || || | ||| ||||| | ||||| || ||||||
Sbjct 511296 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 511355
Query 41768 TCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATC 41827
||| ||| || ||| | | | ||||| || | ||| ||||||| || ||
Sbjct 511356 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCCAGGGTGATG 511415
Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || ||||| |||||||| || |||||||| ||
Sbjct 511416 GTCTTGCCAGTCAGGGTCTTTACAAAGATCTGCATTTT 511453
>seq281
Length=3633602
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| ||| || ||||| ||||| || || || || || ||
Sbjct 126489 AGACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTACGG 126548
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || || || || || || || |||| | ||| ||||| | ||| | || ||
Sbjct 126549 CCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCT 126608
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
||||| ||| ||| ||| | | | ||||| || | ||| ||||| | ||
Sbjct 126609 TTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTA 126668
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||||||||| || || || || || ||||||||
Sbjct 126669 ATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCAT 126706
>seq40
Length=22442042
Score = 82.4 bits (90), Expect = 7e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767
|| || ||||||||||| || || || || | ||| ||||| | ||||| || ||||||
Sbjct 9523710 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 9523651
Query 41768 TCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATC 41827
||| ||| || ||| | | | ||||| || | ||| ||||||| || ||
Sbjct 9523650 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCCAGGGTGATG 9523591
Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || ||||| |||||||| || |||||||| ||
Sbjct 9523590 GTCTTGCCAGTCAGGGTCTTTACAAAGATCTGCATTTT 9523553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462185534600000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |