Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq78 111 1e-19 seq104 107 2e-18 seq13262 105 6e-18 seq219 98.7 9e-16 seq81 87.8 2e-12 seq7 86.0 6e-12 seq346 82.4 7e-11 seq281 82.4 7e-11 seq40 82.4 7e-11 >seq78 Length=14163838 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701 || ||||| | |||||||||||| ||| ||| ||||| ||||| ||||| ||||| ||| Sbjct 4568731 CGCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTG 4568790 Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTC 41761 || | || || |||| || || || || ||||| ||||||| ||| | | | | | | Sbjct 4568791 CGGCCATCCTCCTGCTGTTTACCCGCAAAAATCAGACGCTGTTTGTCAGGGAGGATACCC 4568850 Query 41762 TCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACC 41821 | |||||| |||||| || | | | ||||| || | ||||||||| Sbjct 4568851 TACTTGTCTTGGATTTTGGCTTTGATATTCTGGATGGTGTCACTGGGCTCCACCTCAGGA 4568910 Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||||||| ||||| || || |||||||| Sbjct 4568911 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4568951 >seq104 Length=11152936 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | || || ||||| || ||| ||||| ||||| || || Sbjct 9999598 ACAGCCACCCCTCAGACGAAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAATC 9999539 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| || || || || | ||| ||||| | Sbjct 9999538 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 9999479 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| || ||||||||| ||| || ||| | | | ||||| || | ||| Sbjct 9999478 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTC 9999419 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| |||| || || || || | ||||| |||||||| || |||||||| || Sbjct 9999418 CACTTCCAGGGTGATGGTCTTGACAGTCAGGGTCTTTACAAAGATCTGCATTTT 9999365 >seq13262 Length=12524 Score = 105 bits (116), Expect = 6e-18 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701 || ||||| | |||||| ||||| ||| ||| |||| ||||||||||| ||||| ||| Sbjct 9175 CGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTAGATGTTATAGTCTGAGAGAGTG 9116 Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTC 41761 | | || || ||||| || || | || ||||| ||||| ||||| | ||| | | | Sbjct 9115 CAGCCATCCTCCAGCTGTTTACCCACAAAAATCAGACGCTGCTGGTCAGGGGGGAGACCC 9056 Query 41762 TCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACC 41821 ||||| | || ||| |||| ||| | ||||| || | || |||||| | Sbjct 9055 TCCTTAT-TTTGGACTTTGGCTT---TGACATTATGGTGTCACTAGGCTTCACCTCAAGA 9000 Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||||||| ||||| || || |||||||| Sbjct 8999 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 8959 >seq219 Length=5435593 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||| | ||| | |||| | ||||| ||| ||| ||||| ||||| |||| | Sbjct 4753213 CGCCACCGTGCAGATGCCGCACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTG 4753154 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||| || | | || || ||||| || || || || ||||| |||| ||||| | || Sbjct 4753153 AGAGAATGGGGCCATCCTCCAGCTGTTTACCTGCAAAAATCAGATGCTGCTGGTCAGGGG 4753094 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCC 41812 | |||||||||| | || |||| |||| || | | |||||| || | |||| Sbjct 4753093 AGATCCTCTCCTTGT-CTTGGATTTTGGCTTTGACATTCTCGATAGTGTCACTGGGCTCC 4753035 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGC 41860 ||||| | || || || || ||| |||| ||||| || ||| ||||| Sbjct 4753034 ACCTCAAGAGTGATGGTCTTGCCCATCAGAGTCTTCACAAAATTCTGC 4752987 >seq81 Length=13573838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 20/233 (9%) Strand=Plus/Plus Query 41639 CCGCGTAGACGTAACAC----CAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||| ||||||| ||| ||| ||||| ||| ||||||||| ||||| |||||||| Sbjct 12460570 CCGCGCAGACGTAGCACGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 12460629 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| |||| | || || ||||| || || | || ||||| | ||| ||||| | | | Sbjct 12460630 GAGAGTGCTGCCATCCTCCAGCTGTTTACCCACAAAAATCAGACACTGCTGGTCAGGGCG 12460689 Query 41755 AACGCTCTCCTTGTCCATGATTT----TTTG-CTTCAACGACGACACAGTGTCGCTCGAC 41809 | ||||||||| ||||| |||| | | ||| | ||||| || | | Sbjct 12460690 GATATCCTCCTTGTCTTGGATTTGGGCTTTGACATTCTCGATG-----GTGTCACTGGGC 12460744 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| | || || ||| |||| ||||| || || |||||||| Sbjct 12460745 TCCACCTC------AAGAGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 12460791 >seq7 Length=39982324 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| || || ||| ||| ||||| ||||| || || || Sbjct 19177370 GCCACCACGCAGACGCAGCACCAGCTGTAGGGTGGACTCTTTCTGGATGTTGTAATCTGA 19177311 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA-TCAGGCGCTGTTGGTCCGCGG 41753 ||| ||| | | || || |||| || || || || | |||| |||| | ||| | || Sbjct 19177310 GAGAGTGTGGCCATCCTCCAGCTATTTACCAGCAAAAAATCAGATGCTGCTAGTCAGGGG 19177251 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCC 41812 || || |||||||| |||||| |||| || || | |||| || | |||| Sbjct 19177250 GATACCT-TCCTTGTCTTGGATTTTG-GCTTTGACATTCTCAATGGTGTCACTGGGCTCC 19177193 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | | | || || || |||| |||||||| ||||||||||| || Sbjct 19177192 ACCTCAAGAGCAGTGGTCTTGTCCATCAGGGTCTTTACAAAAATCTGCATCTT 19177140 >seq346 Length=2583767 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || || ||||||||||| || || || || | ||| ||||| | ||||| || |||||| Sbjct 511296 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 511355 Query 41768 TCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATC 41827 ||| ||| || ||| | | | ||||| || | ||| ||||||| || || Sbjct 511356 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCCAGGGTGATG 511415 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||||| |||||||| || |||||||| || Sbjct 511416 GTCTTGCCAGTCAGGGTCTTTACAAAGATCTGCATTTT 511453 >seq281 Length=3633602 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| || ||||| ||||| || || || || || || Sbjct 126489 AGACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTACGG 126548 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || || || || || || |||| | ||| ||||| | ||| | || || Sbjct 126549 CCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCT 126608 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| ||| ||| | | | ||||| || | ||| ||||| | || Sbjct 126609 TTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTA 126668 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||||||||| || || || || || |||||||| Sbjct 126669 ATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCAT 126706 >seq40 Length=22442042 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || || ||||||||||| || || || || | ||| ||||| | ||||| || |||||| Sbjct 9523710 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 9523651 Query 41768 TCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATC 41827 ||| ||| || ||| | | | ||||| || | ||| ||||||| || || Sbjct 9523650 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCCAGGGTGATG 9523591 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||||| |||||||| || |||||||| || Sbjct 9523590 GTCTTGCCAGTCAGGGTCTTTACAAAGATCTGCATTTT 9523553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462185534600000