Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq25 250 3e-61 seq92 183 3e-41 seq3 111 2e-19 seq1 98.7 1e-15 >seq25 Length=39250790 Score = 250 bits (276), Expect = 3e-61 Identities = 418/601 (70%), Gaps = 9/601 (1%) Strand=Plus/Minus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 |||||||| ||||| || || || ||||| | || | || || |||||||| |||||| Sbjct 34005673 AGGTGTTTGAACATGAGGCAGGCAAAGTCACCGTGCAAACCCTCATCTCTGCTAATAAGT 34005614 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| || | ||||||||| |||||||||||| | |||||| || | ||| Sbjct 34005613 TCCTTGGAAAACGTGAGGCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAAGATGGATGCA 34005554 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || || ||||| || || || || | |||||| || | | ||| || |||| Sbjct 34005553 AACGAACCGGAGAAGAAGATGCCTTCCACTGCTGCAAAGGCTACAACTCGCTCTCCGTAG 34005494 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 ||||| ||||| | | |||||| | |||| || || || | || | |||| | Sbjct 34005493 GTAGCTTCTTTGTCGCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGC 34005434 Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCT--GAATATCGATTATATACGTAT 16481 || || || ||| | || || | | ||| |||||| ||| | ||| | || | Sbjct 34005433 ATTGTCTCAATGACATTGAAGAGATACTCCCTTTCCTTGGAA---CCTTTA---ATGTGT 34005380 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 ||||||| | ||| |||||||| || |||||||| || || || || || || ||||||| Sbjct 34005379 CAATCAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGA 34005320 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 | || || ||||| | || || ||||| | |||||| ||| |||||||||||| || Sbjct 34005319 AACAACGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAGGTTCTCATGCA 34005260 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAG 16661 | || | ||||| | ||||| || |||| ||| ||||||| | | || |||| Sbjct 34005259 CTAT-GCATCACTGGTTGCAAAGAAAGCCAGAGCGTGGGATATGAAATCTCTCTCCTCAG 34005201 Query 16662 ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAA 16721 | || | ||| | | |||| || | ||||| || || | |||||||| Sbjct 34005200 GCTTCAGGGCTTCCCAGTGCTGAGTGGCTTTAGAAAGATCCAGCTCCTCGGCCGTCCAAA 34005141 Query 16722 AGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGA 16781 || ||| | || || |||||||| | |||||| |||| ||| | |||||||| || | Sbjct 34005140 AGGAGGCCTCAGCTTTCTTATACATCTGCCAAATGTCATGGTACTCGATGGGAAAGACAA 34005081 Query 16782 C 16782 | Sbjct 34005080 C 34005080 >seq92 Length=6660306 Score = 183 bits (202), Expect = 3e-41 Identities = 545/836 (65%), Gaps = 40/836 (5%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA-GGGATT 15990 || || |||||||| || || || || | || || || |||||||| ||||| ||| || Sbjct 3254003 TTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGAAATGTTCTCCATAAAGTCAAATGGGTTT 3254062 Query 15991 AGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTC 16050 || || || ||||| | | |||| |||| || || ||||| || ||||| Sbjct 3254063 TCTA-CTTTGAACATCTTGTTGAAACCCAATTCCAGTGTTAGCCTGTCTGCCACGAATTC 3254121 Query 16051 TATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGT 16110 || || | |||||| |||||| ||||| || || || | || || | || Sbjct 3254122 AATGTACTATGTCATTAAAGTGCAATTCATTCCAATCAGCTTCACGTGCAGGGCCTCCGT 3254181 Query 16111 TAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGA 16170 | |||| |||||| || || || | | ||||| || ||| || || Sbjct 3254182 CAGGAATTCCTGTTCTCTCCTGACAGCAT---TCATGATTTCTTGTACTCTCTGCTCCGA 3254238 Query 16171 CGG--TGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 || |||| | |||||||| |||| || || || || || || || | || || Sbjct 3254239 AGGGTTGTACAGC--AGGTGTTTGAACACGAGGCAGGCAAAATCACATTGCAAACCCTCA 3254296 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288 |||||||| |||||||| |||||||| | | || |||||| |||||||||||| | | Sbjct 3254297 TCTCTGCTAATAAGTTCATTGGAAAATGAGAGGCCAGGCATTAGTCCTCGTTTCTTGAGC 3254356 Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348 ||||| || | |||||||| || | |||| || || || || | ||||| || | Sbjct 3254357 CAGAAAATGGATGCAAATGAACC---AGAGAAGATTCCTTCCACTGTCGCAAAGGCTACA 3254413 Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408 | ||| | | || ||| | ||||| || | |||||| | |||| || || || Sbjct 3254414 ACTCGCACTCCATAGGTAACTTCTTTGTTTCCAATCCAACGCAAGGCCCAATCTGCCTTC 3254473 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCG 16468 || | |||| ||| |||| |||| || || | | || |||||| ||| Sbjct 3254474 ACCTTCACACAAGGCATTGTTTAAGTGGCATTGAAGAGATATTCCCTTTCCTTGGAATCT 3254533 Query 16469 ATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATC 16528 | ||||| || ||||| || | | | |||||||| || || ||||| || || | || Sbjct 3254534 TTAATATAAGTGTCAATGAGGAGATTATACATTTCAGAATGGATGTTTTCCATAGTAATT 3254593 Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || || ||| |||| || | |||| | | | |||||| ||| || Sbjct 3254594 TGGAAGCCACAGAAACA----------GAAATTTAT------AGGCTAAATCGCTCCACC 3254637 Query 16589 AGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAA 16648 |||||||||||||| || | ||||| || ||||| || | || |||| | |||||| Sbjct 3254638 AGGTTCTCATTCACTATGCTATCACTGGCTGCAAAGAAAG--AACGTGTGAT--ATGAAA 3254693 Query 16649 TATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCT 16708 ||| | || |||| | ||| | | | ||| || || | |||||| || Sbjct 3254694 TATCTCTCCTCAG--------GCTTCCCAGTGCTGAATATCGTTAGACAGATCCACCTCC 3254745 Query 16709 TCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTA 16764 || | |||||||||| |||| | || || |||||||| | |||||| |||| ||| Sbjct 3254746 TCGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATGTCATGGTA 3254801 >seq3 Length=92262745 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || |||| |||| |||| Sbjct 36784331 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTCAGTCCCGGCAGAAGACCTCTCTTCT 36784272 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||||||||||||| |||||||| || ||||| ||||| || || || |||| ||||||| Sbjct 36784271 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 36784212 Query 16344 C 16344 | Sbjct 36784211 C 36784211 >seq1 Length=111700974 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||||||||| |||||||| || | || |||||| |||||| ||||| Sbjct 4139651 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATTAGTCCTCGCTTCTTG 4139592 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | |||||| || | |||||||| || || ||||| || || || || | |||||| || Sbjct 4139591 AGCCAGAAGATGGAGGCAAATGAACCGGAGAAGAAGATGCCTTCCACTGCTGCAAAGGC 4139533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511360688702640