Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 134 2e-26 seq8 127 2e-24 seq225 104 3e-17 seq70 102 9e-17 seq39 100 3e-16 seq32 100 3e-16 seq26 98.7 1e-15 seq9 98.7 1e-15 seq116 89.7 6e-13 seq25 87.8 2e-12 seq2 86.0 7e-12 seq149 82.4 9e-11 >seq5 Length=88520344 Score = 134 bits (148), Expect = 2e-26 Identities = 162/219 (74%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 40362618 ACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCC 40362677 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| |||||||| || || || ||||||||||| | || | || |||||| Sbjct 40362678 ATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 40362737 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| ||||| || | | |||||||| | ||||| || | ||||| Sbjct 40362738 GTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCT-GGCTCCACCTCAAGGGTGAT 40362796 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| |||||||| || ||||| |||||||| ||||| || Sbjct 40362797 GGTCTTGCCCGTCAGGGTCTTCACAAAGATGTGCATGTT 40362835 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| | ||| | |||||||||||| || |||||| | |||||||||||| ||| Sbjct 56329996 AAAAATTCGCCTCCCCATCAGGGAATCGAAACCCGGTCTCTCTCGTGACAGGCGGGGATA 56329937 Query 60116 CTCACCACTATACTACCGAGGA 60137 ||||||||||||||| |||||| Sbjct 56329936 CTCACCACTATACTAACGAGGA 56329915 >seq8 Length=79101790 Score = 127 bits (140), Expect = 2e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| |||| ||| ||| || || || ||||| || ||||| || | Sbjct 4905341 ACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAGAGAGTGCGGCC 4905400 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| |||||||| || || || ||||||||||| | || | || |||||| Sbjct 4905401 ATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 4905460 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| ||||| || | | |||||||| | || || || | ||||| Sbjct 4905461 GTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGAT 4905520 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 ||| ||| |||| || ||||| |||||||| ||||| ||| || Sbjct 4905521 GGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCATGTTTGCG 4905563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 32113455 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 32113514 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 32113515 TACTAACGAGGA 32113526 >seq225 Length=154652 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 79105 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 79164 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 79165 CTATACTAACGAGGA 79179 >seq70 Length=10445819 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1950611 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1950670 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 1950671 TACTAACGAGGAATGA 1950686 >seq39 Length=19053451 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 14829388 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 14829447 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 14829448 TACTAACGAGGACTG 14829462 >seq32 Length=28911305 Score = 100 bits (110), Expect = 3e-16 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 || || |||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 25037334 ACACAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCC 25037275 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG-----GCCGGCACGCTC 43082 || || |||||||||||||| | || || |||||||||| | | || | || | Sbjct 25037274 ATCCTCCAGCTGCTTACCAGCAGAAATCAGACGCTGCTGGTGGGGGGAGGGGGGATGCCC 25037215 Query 43083 TCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACC 43142 |||||||| |||||| ||||| ||| | | |||||||| | || | || | Sbjct 25037214 TCCTTGTCTTGGATTTTGGCTTTGACAGTCTCGATGGTGTCGCT-GGCTCAGCCTCAAGG 25037156 Query 43143 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 |||| ||| ||||| || || ||||| ||| |||| ||||| ||| Sbjct 25037155 GTGACGGTCTTGCCTGTCAGGGTCTTCACAGAGATCTGCATCTTT 25037111 >seq26 Length=39178583 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 39136521 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 39136580 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 39136581 TACTAACGAGGA 39136592 >seq9 Length=72894145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 || || |||||||||| ||||| || | || || |||||||| || || || ||||| Sbjct 50766060 TGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGC 50766001 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 43118 | ||||||||| | || | || |||||| ||| ||| || || | || | | Sbjct 50766000 CTCTGCTGGTCAGGGGG-ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATG 50765942 Query 43119 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 43178 || ||||| | ||||| || | ||||||| ||| || || || |||||||| |||||| Sbjct 50765941 GTATCGCTGGGCTCCACCTCCAGGGTGATGGCTTTCCCAGTCAGGGTCTTTACGAAGATT 50765882 Query 43179 TGCATTTTTAC 43189 ||||| | ||| Sbjct 50765881 TGCATCTGTAC 50765871 >seq116 Length=3800712 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || | ||||||||| ||||| ||| | || || |||||||| || || || Sbjct 1368252 CTCTTTCTGGGTGTTGTAATCATAGAGAGTGCGC-CATCTTCCAGCTGCTTGCCCGCAAA 1368310 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | || |||||| ||| ||| || || | | Sbjct 1368311 GATGAGCCTCTGCTGGTCAGGTGG-ATGCCCTCCTTATCCTGGATCTTGCCCTTCACGCT 1368369 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | ||||| | |||| || | ||||||||||| || || || |||||||| Sbjct 1368370 CTCGATGGCATCGCTGGGCTCCAGCTCCAGGGTGATGGTTTTCCCAGTCAGGGTCTTTAC 1368429 Query 43172 AAAGATTTGCATTTTTAC 43189 ||||||||||| | ||| Sbjct 1368430 GAAGATTTGCATCTGTAC 1368447 >seq25 Length=39250790 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||||| |||| |||||||| ||||||||| || ||||||||||||| Sbjct 8490713 CTCCCCGTCGGGGAATCGGACCCCGGTCTCCCACGTGACAGGAGGGGATACTCACCACTA 8490654 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 8490653 TACTAACGAGGAT 8490641 >seq2 Length=97923104 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||| || ||||||| || ||||||||||||| Sbjct 78673958 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCTGCATGACAGGTGGGGATACTCACCACTA 78673899 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 78673898 TACTAACGAGGA 78673887 >seq149 Length=1867543 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 43032 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 || || ||||||||||| || || || ||||||||||| || | || |||||| || Sbjct 1663238 TCCAGTTGCTTACCAGCAAAAATCAGACGCTGCTGGTC-CAGGGAATGCCCTCCTTCTCT 1663296 Query 43092 ATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 |||||| ||||| || | | |||||||| | ||||| || | | |||||| Sbjct 1663297 TGGATTTTGGCTTTGACATTCTCGA-TGTGTCGCTGGGCTCCACCTCAAAGGCGATGGTC 1663355 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 ||||||| || ||||| ||| |||| ||||| ||| || Sbjct 1663356 TTGCCCGCCAGGGTCTTCACAGAGATCTGCATCTTTGCG 1663394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571757544856560