Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq51 253 2e-62 seq92 232 6e-56 seq25 224 9e-54 seq1 98.7 9e-16 seq3 95.1 1e-14 >seq51 Length=16359109 Score = 253 bits (280), Expect = 2e-62 Identities = 599/896 (67%), Gaps = 28/896 (3%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| | | ||| | ||||| || | |||||||| |||||||| || || || | Sbjct 9671613 TTGACATCATTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCC 9671672 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT-----TTGAACAATAGTATTT 16041 |||| | || || || |||||||| ||||| || |||| ||||||| | || Sbjct 9671673 CTTCCAGGGACATGTTCTCCATAAAGTCAAATGGGTTTTCTACTTTGAACAGCT-TGTTA 9671731 Query 16042 ATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAA 16101 | | |||| ||||| || || || || ||||| ||||| || | |||| |||| || Sbjct 9671732 A----AACCCAGTTCCAGCATTAGCCTGTCTGCCACGAATTCAATGTGCTGTGTCATCAA 9671787 Query 16102 ATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTAT 16161 | || |||||||| || | ||| | || | ||||| || | || | | ||||| Sbjct 9671788 AGTGCAATTCATTCCAATCAGTTTCAAGGGCAAGGCTTCCGTAAGGAATTCCTGTTCTAC 9671847 Query 16162 ATTAACCGCTT---CAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT----A 16214 | || || | |||||||| ||| |||| | || | | || ||||| | Sbjct 9671848 TCTGACAGCATTCACAATGATT---TCTTGTACT-CTCTGCT---CTGAAGGTTTGTGCA 9671900 Query 16215 ATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTA 16274 | |||||| |||| | || ||||| ||||| ||||| || || || || | || | Sbjct 9671901 GCAGGTGTTTGAACACGAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCGAATAA 9671960 Query 16275 ACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGG 16334 || || ||||| || || |||||||||||||||| ||| || | ||| || || | || Sbjct 9671961 CTTCATTGGAAAACGTGAGGCCTGGCATTAGTCCTCCTTTCTTGAGCCAGAAGATGGAGG 9672020 Query 16335 CAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGT 16394 |||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| || | Sbjct 9672021 CAAACGAACCGGAGAAGAAGATGCCTTCCACTGCTGCAAAGGCTACAACTCTCTCTCCAT 9672080 Query 16395 ACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGT 16454 | || || | ||| | ||||| ||||||| ||| || | || ||||| Sbjct 9672081 AGGTACTTTCTTTGTCGCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAG 9672140 Query 16455 TCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTAT 16514 ||| |||| | ||| | || | ||| | |||||||| ||| ||| ||||| | Sbjct 9672141 GCATTGTCTCCGTGGCACTGAAGAGATACTCCCTTTCTTTGGACTCTTTAATGTAAGTGT 9672200 Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA 16574 | || || | |||||||||||| ||||| || || |||||||| || || |||||||| | Sbjct 9672201 CAATCAGGAGACTATACATTTCAGAATGTATGTTATCCATTGCAATTTGGAAACCATAGA 9672260 Query 16575 AGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAA 16634 | | | || || | || || | || | ||| | || | | |||||| | | Sbjct 9672261 ACTAGCGGGCCTCTGTAATCTGAATGTCTTGGCTAAATCGCTCCACCAGGTTTTCATGCA 9672320 Query 16635 CTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA- 16693 | || || || || |||||||| || || || ||| || |||| | | || | | Sbjct 9672321 CGATGCCGTCACTGGCTGCAAAGAAAGCCAGAGCGTGGGATATGAAATCTCTCTCCTCAG 9672380 Query 16694 TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAA 16753 ||| | | || ||||| || ||||| || | ||| || | || | |||||| Sbjct 9672381 GCTGCAGGGCTT-CCCAGTGCTGAATGTCTTTAGAAAGATCCAC--CCTCGGCCGTCCAA 9672437 Query 16754 AAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 || || || |||| || |||||||| | ||| ||| | | ||| | || ||||| Sbjct 9672438 AAGGAGGCCTCAGCTTTCTTATACATCTGCCAAATGCCATGGTACTCGATGGGAAA 9672493 >seq92 Length=6660306 Score = 232 bits (256), Expect = 6e-56 Identities = 612/933 (66%), Gaps = 50/933 (5%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || || ||||| | ||| ||| ||| ||| ||||||| ||| ||| | Sbjct 3253923 TTTAGAAGTCGGCATCTAAGGTAAAGGAATTCTCTGTTTGGCTTGACATCACTCCCATCT 3253982 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | | || || | |||||||| |||||||| || || || ||||| | ||||| || | Sbjct 3253983 TCTAGTACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGAAATGTTCT 3254042 Query 16005 CCATAAAATCAAAAGGATTTT-----TTGAACAATAGTATTTATCGCATCCCAATTCCAA 16059 ||||||| ||||| || |||| ||||||| || | | | |||||||||| Sbjct 3254043 CCATAAAGTCAAATGGGTTTTCTACTTTGAACATC-----TTGTTGAAACCCAATTCCAG 3254097 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 || || || ||||| ||||| || |||| | |||||||| || |||||||| || Sbjct 3254098 TGTTAGCCTGTCTGCCACGAATTCAATGTACTATGTCATTAAAGTGCAATTCATTCCAAT 3254157 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 | || || | | || || || | || | | |||| | | || || | ||||| Sbjct 3254158 CAGCTTCACGTGCAGGGCCTCCGTCAGGAATTCCTGTTCTCTCCTGACAGCATTCATGAT 3254217 Query 16180 TATATCTCTTACTACACTATTTAACGGAGGGTTTAATAA---GTGTTTAAACATTATACA 16236 | |||| ||| || | || |||||| | | |||||| |||| | || Sbjct 3254218 T-----TCTTG-TACTCTCTGCTCCGAAGGGTTGTACAGCAGGTGTTTGAACACGAGGCA 3254271 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||||||||| ||||| || || || || || || | || || ||||||| || || Sbjct 3254272 GGCAAAATCACATTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGAGAGGCC 3254331 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||||||||||||||| || | ||| || || | ||||||||||||| |||| || Sbjct 3254332 AGGCATTAGTCCTCGTTTCTTGAGCCAGAAAATGGATGCAAATGAACCAG---AGAAGAT 3254388 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 ||||| |||| ||||| || || | |||| | || || || | ||| || | || Sbjct 3254389 TCCTTCCACTGTCGCAAAGGCTACAACTCGCACTCCATAGGTAACTTCTTTGTTTCCAAT 3254448 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 ||| ||||||| ||| || || ||||| ||| | | | ||||| || Sbjct 3254449 CCAACGCAAGGCCCAATCTGCCTTCACCTTCACACAAGGCATTGTTTAAGTGGCATTGAA 3254508 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 | ||| | |||| ||| |||| ||||||||| || || || | | |||||||||| Sbjct 3254509 GAGATATTCCCTTTCCTTGGAATCTTTAATATAAGTGTCAATGAGGAGATTATACATTTC 3254568 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 ||||| || || ||||| | || || || ||| | || || || |||| Sbjct 3254569 AGAATGGATGTTTTCCATAGTAATTTGGAAGCCACAGAAACA----------GAAATTTA 3254618 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 || | ||| | || | | ||| || || ||||| | ||| || |||||||| Sbjct 3254619 TA------GGCTAAATCGCTCCACCAGGTTCTCATTCACTATGCTATCACTGGCTGCAAA 3254672 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGA 16716 | ||| | |||| || |||| | | || || | || ||||| Sbjct 3254673 ----GAAAGAACGTGTGATATGAAATATCTCTC-----CTCAGGCTT---CCCAGTGCTG 3254720 Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 || ||| || || | ||| ||||| || | |||||||| ||||| |||| || ||||| Sbjct 3254721 AATATCGTTAGACAGATCCACCTCCTCGGCCGTCCAAAAGGAAGCCTCAGCTTTCTTATA 3254780 Query 16777 CATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 ||| | ||| ||||| | ||| | ||||||| Sbjct 3254781 CATCTGCCAAATGTCATGGTACTCGGTAGGAAA 3254813 >seq25 Length=39250790 Score = 224 bits (248), Expect = 9e-54 Identities = 596/898 (66%), Gaps = 28/898 (3%) Strand=Plus/Minus Query 15930 ACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTT 15989 |||| ||| |||| | ||||| || | |||||||| ||| |||| | || || |||| Sbjct 34005959 ACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGCTCGTCTTCCCTT 34005900 Query 15990 CTAATGAAATATTTTCCATAAAATCAAAAGGATTTT-----TTGAACAATAGTATTTATC 16044 | | ||||| || |||||||| ||||| | |||| ||||||| | | || | Sbjct 34005899 CCAGGGAAATGTTCTCCATAAAGTCAAATGAGTTTTCTACTTTGAACA-TCTTGTTAA-- 34005843 Query 16045 GCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC 16104 | |||| ||||| || || || | ||||| ||||| | | |||| |||| ||| Sbjct 34005842 --AACCCAGTTCCAGCATTAGCCTGTTTGCCACGAATTCAACGTGCTGTGTCATCAAAGT 34005785 Query 16105 ACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATT 16164 || |||||| | || || || || || | || || | || | | |||||| | Sbjct 34005784 GCAATTCATTTCAATCAACTTCAC-GGCAAGGCCTCCATATGGAATTCCTGTTCTATCCT 34005726 Query 16165 AACCGC-TTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTT----AATAAG 16219 || || |||| | || || ||| |||| | || | | || ||||| | | | Sbjct 34005725 GACAGCATTCACT-ATGATTTCTTGTACT-CTCTGCT---CTGAAGGTTTGTGCAGCAGG 34005671 Query 16220 TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCG 16279 ||||| ||||| | || ||||| |||| ||||| || || || || || || | || Sbjct 34005670 TGTTTGAACATGAGGCAGGCAAAGTCACCGTGCAAACCCTCATCTCTGCTAATAAGTTCC 34005611 Query 16280 TTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAAT 16339 || ||||| || || |||||||||||||||||||| || | ||| || || | ||||| Sbjct 34005610 TTGGAAAACGTGAGGCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAAGATGGATGCAAAC 34005551 Query 16340 GAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT 16399 ||||| || ||||| || ||||| ||||| ||||| || || | |||||| ||||| || Sbjct 34005550 GAACCGGAGAAGAAGATGCCTTCCACTGCTGCAAAGGCTACAACTCGCTCTCCGTAGGTA 34005491 Query 16400 CTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATG 16459 | ||| | ||||| ||||||| ||| || | || ||||| ||| Sbjct 34005490 GCTTCTTTGTCGCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATT 34005431 Query 16460 TTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATT 16519 |||| || |||| || | ||| | |||| ||| | || ||| || || || Sbjct 34005430 GTCTCAATGACATTGAAGAGATACTCCCTTTCCTTGGAACCTTTAAT----GTGTCAATC 34005375 Query 16520 AGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCAT 16579 || | |||||||||||| ||||| || || ||||| || || || || ||||| || || Sbjct 34005374 AGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAA 34005315 Query 16580 CTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATT 16639 | || || | || || ||||| | ||| | || | | ||| || | |||| | Sbjct 34005314 CGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAGGTTCTCATGCACTA-T 34005256 Query 16640 CCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTA-TCTGA 16698 |||| || | |||||| || || || ||| || |||| | | || | | || Sbjct 34005255 GCATCACTGGTTGCAAAGAAAGCCAGAGCGTGGGATATGAAATCTCTCTCCTCAGGCTTC 34005196 Query 16699 AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 | | || ||||| | |||| || | ||| | ||| || | |||||||| || Sbjct 34005195 AGGGCTT-CCCAGTGCTGAGTGGCTTTAGAAAGATCCAGCTCCTCGGCCGTCCAAAAGGA 34005137 Query 16759 AGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 || |||| || |||||||| | ||| ||||| | ||| | || ||||| |||||| Sbjct 34005136 GGCCTCAGCTTTCTTATACATCTGCCAAATGTCATGGTACTCGATGGGAAAGACAACA 34005079 >seq1 Length=111700974 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || ||||| || || || |||||||||||||| || || Sbjct 4139651 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATTAGTCCTCGCTTCTTG 4139592 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| || || | |||||||||||| || ||||| || ||||| ||||| ||||| || Sbjct 4139591 AGCCAGAAGATGGAGGCAAATGAACCGGAGAAGAAGATGCCTTCCACTGCTGCAAAGGCT 4139532 Query 16379 ACCAATCGCTCACC 16392 || | |||||| || Sbjct 4139531 ACAACTCGCTCTCC 4139518 >seq3 Length=92262745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 15887 TAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTT 15946 |||||||| ||| | | || ||||||||| | | | || |||||||| | Sbjct 36798951 TAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAACGC 36798892 Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 || || || ||||| |||||||| ||||||||||| ||||| || ||||| |||||| Sbjct 36798891 TGGTACTCGGAAACTCGTTTTTCAAAAAAATTTGTTTTCCCTTCCAAAGAAATGTTTTCC 36798832 Query 16007 ATAAAATCAAAAGGATTTTTTG 16028 ||||||||||| ||||||| || Sbjct 36798831 ATAAAATCAAAGGGATTTTCTG 36798810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462463424677200