Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 1e-12 seq25 84.2 2e-11 seq29 82.4 6e-11 >seq11 Length=65385231 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||| | || || | |||| Sbjct 17608084 AGGACCAGGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTCAGACAGGGTCCAGCCATCT 17608025 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || | || || || | |||||||||||| Sbjct 17608024 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCGGCTGGTCAGGAGGGATGCCTTCCTTATCT 17607965 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||||| |||| |||| ||||||| | Sbjct 17607964 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGC------TCAAGGGTGATGGTC 17607911 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||| || || ||||| || |||||| Sbjct 17607910 TTACTGGTCAGGGTCTTGACAAAGATCTGCATT 17607878 >seq25 Length=39250790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||| || ||||||||||| | | | || | |||||||| || || || Sbjct 16908927 GTAGATTCTTTCTGGATGTTGTAGTCAGACTTAGTGCAGCCATCTTCCAGCTGCTTCCCA 16908868 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC-GGCAATTTGTTGCTT 18247 ||| |||| || || || || || || |||||||||||| | | ||| ||| Sbjct 16908867 GCAAAGATCAGCCTCTGGTGGTCAGGAGGGTTGCCTTCCTTATCTTGGACCTTG--CCTT 16908810 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 ||||| ||| ||||| | ||||||| |||| || |||| | || || || | || Sbjct 16908809 GACCTTCTCAATGGTGTCCCTGGGCTCGACCTCAAGGGCGATGGTCTTACCAGTTACAGT 16908750 Query 18308 TTTTACAAAAATTTGCATTTTT 18329 ||| ||||| || |||||| || Sbjct 16908749 TTTCACAAAGATCTGCATTGTT 16908728 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||| | | ||| || |||| Sbjct 16909170 AGGACCAGGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTCCGACTGTGTGCAACCATCT 16909111 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || || ||| | | || || || || || | ||||| |||||| Sbjct 16909110 TCCAGCTGTTTCCCAACAAAGACAGGCCTCTGCTGGTCAGGAGGGATGCCTTTCTTATCT 16909051 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||| | | || ||||||| ||||| | |||| |||||| | Sbjct 16909050 TTGATCTTTGCCTTGGCATTCTCAGTGGTGTCACTGGGCTTGACCTCAAGGGTGATTGTC 16908991 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||| || || ||||| || |||||| Sbjct 16908990 TTCCTGGTCAGGGTCTTAACAAAGATCTGCATT 16908958 >seq29 Length=30315017 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||| | | ||||||||||| | || || | |||| Sbjct 6174627 AGGACCAGGTGCAGAGTCGATTCTCT--GGATGTTGTAGTCAGACAGGGTGCGGCCATCT 6174570 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC-ACGCCTTCCTTATC 18232 |||| || || |||||| |||| || || || || | || | || | |||| |||| || Sbjct 6174569 TCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGT-CAGGAGCGATGCCTGCCTTGTC 6174511 Query 18233 GGCAATTTGTTG-CTTGAC-CTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 | | |||| |||||| || | ||| ||||||| ||||||| || | ||||| | Sbjct 6174510 TTGGA-TCGTTGCCTTGACACTCT-CAATGGTGTCACTGGGCTCGACCTCCAGGGTGACG 6174453 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | ||||| || || ||||| ||| | || |||||| Sbjct 6174452 GTCTTGCCAGTTAAAGTTTTCACAGAGATCTGCATT 6174417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379305155411490