Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq35 114 1e-20 seq8 102 7e-17 seq5 96.9 3e-15 seq1 93.3 4e-14 seq52 82.4 7e-11 seq26 82.4 7e-11 >seq35 Length=22427959 Score = 114 bits (126), Expect = 1e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| |||||| || |||||||| ||||| || || || ||||| | || || | Sbjct 214621 CCACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCTTTTGATGG 214680 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || || || || ||||| ||||||||||||||||| | Sbjct 214681 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAAGAATCTTTGTAGAGCATGTACGGGG 214740 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || ||||| ||| ||||| ||||| || Sbjct 214741 TCCCTGTCTCTGTCTGAGACTCAATGATGGC 214771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 ||| ||||| || || |||||||| | ||| ||| |||||| || | ||||| | Sbjct 206512 CACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAAT 206571 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 || ||||| || |||||||||||||| || ||||| || |||||||| || | || || Sbjct 206572 GGACTCATTATTCCCCAGTATCTGAGCAGTGGAAGCAGTAGGCATCGGGGCAATAAGCAG 206631 Query 22579 CGAGTTTCTCA 22589 |||||||| Sbjct 206632 ACTGTTTCTCA 206642 >seq8 Length=79101790 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| ||||| | ||| || |||||| | || ||||| | Sbjct 4905561 CAAACATGCAGATCTTTGTGAAGACCCTGACGGCCAAGACCATCACCCTTGAGGTTGAGC 4905502 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | |||||| | ||| |||||||| ||| | || || | Sbjct 4905501 CCAGCGACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCCCCGG 4905442 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||||||| || || ||||| |||||| |||| || ||| | || | Sbjct 4905441 ACCAGCAGCGTCTGATTTTTGCTGGTAAACAGCTGGAGGATGGCCGCACTCTCTTGGACT 4905382 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || ||||| || || || || |||| || | ||| | || |||| Sbjct 4905381 ACAACATCCAGAAAGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGTGGTGGTA 4905328 >seq5 Length=88520344 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/158 (74%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 40362835 AACATGCACATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCA 40362776 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | |||| |||| | |||||| | ||| |||||||| ||| | || || ||| Sbjct 40362775 GC-GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATTCCCCCGGAC 40362717 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||| || || ||||| |||||| |||| || Sbjct 40362716 CAGCAGCGTCTGATTTTTGCTGGTAAACAGCTGGAGGA 40362679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||||||| || |||||| | || || || || | Sbjct 1010858 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTGGAGCCCAGC 1010799 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||| ||| | || || |||||| Sbjct 1010798 GACACCATCGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCCCCGGACCAG 1010739 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| ||| || || ||||| |||||| |||| || Sbjct 1010738 CAGCATCTGATTTTTGCTGGTAAACAGCTGGAGGA 1010704 >seq1 Length=111700974 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || || || ||||| ||| ||||||| || |||||| | || | || | Sbjct 26898680 CAAAGATGCACATCTTTGTGAAGACCCTGGCAGGCAAGACCATCACCCTTGAGGGGGAGC 26898621 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| |||| | |||||| | ||| |||||||| ||| | || ||| Sbjct 26898620 CCAGCGACACCATCGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCC-CCCA 26898562 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||||||| || || ||||| |||||| |||| || ||| | |||| Sbjct 26898561 ACCAGCAGCGTCTGATTTTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCT--CGGATT 26898504 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | |||| || | |||| ||||| || || |||| || | ||| | || |||| Sbjct 26898503 ACAACA-TCCAGAAGAGTCGACCCTGCACTTGGTGCTGCGTCTGCGTGGTGGTA 26898451 >seq52 Length=14598744 Score = 82.4 bits (90), Expect = 7e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || || | |||||||| || || ||||| |||| ||||| || |||||| | || |||| Sbjct 7673731 AAGCAGAGATGCAAATCTTTGTGAAGACCCTGAGGGGCAAGACCATCACCCTTGAGGTTG 7673672 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | || ||||| || | |||||| | ||| |||||||||||| | | | Sbjct 7673671 AGCCCAGCGACACCACGGAGAATGTCAAAGCTAAAATTCAAGACAAGGAAGGCCTTCACC 7673612 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 | |||||||| |||| || || |||||| ||||| |||| || Sbjct 7673611 CGAACCAGCAGTGTCTGATTTTTGCTGGCCAACAGCTGGAGGA 7673569 >seq26 Length=39178583 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || || || ||| | ||||||||||| || |||||| | || | ||| | Sbjct 13898388 CAAAGATGCAGATCTT-GTGAAGCCCCTGACAGGCAAGACCATCACCCTTGAGGCTGAGC 13898446 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| || | || ||| | ||| |||||||| ||| | || || | Sbjct 13898447 CCAGCGACACCACTGAGAATGTGAAAGCTAAAATCCAAGACAAGGAGGGCATTCCCCCGG 13898506 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| ||| || || ||||| ||||||||||| || Sbjct 13898507 ACCAGCAGCCTCTGATTTTTGCTGGTAAACAGTTGGAGGA 13898546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445719583383840