Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq51 224 9e-54 seq92 219 4e-52 seq25 205 9e-48 seq35 111 1e-19 seq3 102 8e-17 seq1 102 8e-17 >seq51 Length=16359109 Score = 224 bits (248), Expect = 9e-54 Identities = 495/734 (67%), Gaps = 15/734 (2%) Strand=Plus/Plus Query 11333 CCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGA 11391 |||||| | ||||| || | |||| || | || || || || ||||| ||||| || || Sbjct 9671624 CCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGA 9671682 Query 11392 TATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTC 11451 || | |||||||||| ||| || || | ||| ||||| | || | | |||| | || Sbjct 9671683 CATGTTCTCCATAAAGTCAAATGGGTTTTCTACTTTGAACAGCTTGTTAAAACCCAGTTC 9671742 Query 11452 TGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACC 11511 | || || ||||| |||||||| || | ||| | ||| ||| |||||||| || Sbjct 9671743 CAGCATTAGCCTGTCTGCCACGAATTCAATGTGCTGTGTCATCAAAGTGCAATTCATTCC 9671802 Query 11512 TATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT---C 11568 || || | || || | || | || | || |||| ||||| | || |||| | Sbjct 9671803 AATCAGTTTCAAGGGCAAGGCTTCCGTAAGGAATTCCTGTTCTACTCTGACAGCATTCAC 9671862 Query 11569 AATGATTATCGACGTTATAACTTC--CTTAGATGGTGGATGTAATAAATGTTTAAACATT 11626 ||||||| || || || || || || ||| || | | ||||| |||| Sbjct 9671863 AATGATT-TC----TTGTACTCTCTGCTCTGAAGGTTTGTGCAGCAGGTGTTTGAACACG 9671917 Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 | || ||||| ||||| || ||||| || ||||| | || | |||||| ||||| || Sbjct 9671918 AGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCGAATAACTTCATTGGAAAACGTG 9671977 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | || ||||| | ||||| ||| || | ||| || || | ||||| ||||| || ||| Sbjct 9671978 AGGCCTGGCATTAGTCCTCCTTTCTTGAGCCAGAAGATGGAGGCAAACGAACCGGAGAAG 9672037 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTAG 11804 || || || ||||| |||||||| ||||| ||||| |||||||| ||| || || | | Sbjct 9672038 AAGATGCCTTCCACTGCTGCAAAGGCTACAACTCTCTCTCCATAGGTACTTTCTTTGTCG 9672097 Query 11805 ATA-TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 | |||| ||||||||| || ||||| || || || |||||| || | || Sbjct 9672098 CCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCCGTGGCA 9672157 Query 11864 TTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 | || | || | ||||| | ||| | | || || || || | | ||||||| Sbjct 9672158 CTGAAGAGATACTCCCTTTCTTTGGACTCTTTAATGTAAGTGTCAATCAGGAGACTATAC 9672217 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 ||||| ||||| || || ||||| || ||||| || |||||||| | || ||||||| | Sbjct 9672218 ATTTCAGAATGTATGTTATCCATTGCAATTTGGAAACCATAGAACTAGCGGGCCTCTGTA 9672277 Query 11984 CACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 ||| | || ||||| ||| | | || |||| || || || ||||| | | Sbjct 9672278 ATCTGAATGTCTTGGCTAAATCGCTCCACCAGGTTTTCATGCACGATGCCGTCACTGGCT 9672337 Query 12044 GCAAAAAATGCTAG 12057 ||||| || || || Sbjct 9672338 GCAAAGAAAGCCAG 9672351 >seq92 Length=6660306 Score = 219 bits (242), Expect = 4e-52 Identities = 462/674 (69%), Gaps = 25/674 (4%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| || ||| | ||| |||||||| | || || | |||| || | || | Sbjct 3253951 ATTCTCTGTTTGGCTTGACATCACTCCCATCTTCTAGTACTCGCCTACTC-TCTTCTCAA 3254009 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || || ||||| ||||| || || || | |||||||||| ||| || || | ||| | Sbjct 3254010 AGAAGTTCGTCTTCCCTTCCAGGGAAATGTTCTCCATAAAGTCAAATGGGTTTTCTACTT 3254069 Query 11427 TGAAGA-CTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATAC 11485 |||| | ||| || | |||| || || | || || ||||| |||||||| || ||| Sbjct 3254070 TGAACATCTTGTTGA-AACCCAATTCCAGTGTTAGCCTGTCTGCCACGAATTCAATGTAC 3254128 Query 11486 TGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 | | ||||||| |||||||| || || || | ||| | | || | |||| || Sbjct 3254129 TATGTCATTAAAGTGCAATTCATTCCAATCAGCTTCACGTGCAGGGCCTCCGTCAGGAAT 3254188 Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTC--CTTAGATGGTG 11603 |||| |||| | | || |||| |||||| || || || || || || || Sbjct 3254189 TCCTGTTCTCTCCTGACAGCATTCATGATT-TC----TTGTACTCTCTGCTCCGAAGG-- 3254241 Query 11604 GATGTAATAAA--TGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661 | |||| | ||||| |||| | || ||||||||||| || ||||| || ||||| Sbjct 3254242 GTTGTACAGCAGGTGTTTGAACACGAGGCAGGCAAAATCACATTGCAAACCCTCATCTCT 3254301 Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721 || || |||||||| ||||||| | || ||||| | ||||||||| || | ||| || Sbjct 3254302 GCTAATAAGTTCATTGGAAAATGAGAGGCCAGGCATTAGTCCTCGTTTCTTGAGCCAGAA 3254361 Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCT 11781 || | ||||||||||||| |||| ||||| ||||| | ||||| ||||| |||| Sbjct 3254362 AATGGATGCAAATGAACCAG---AGAAGATTCCTTCCACTGTCGCAAAGGCTACAACTCG 3254418 Query 11782 TTCTCCATA--TACCTT-GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTT 11838 ||||||| || ||| ||| | ||||| ||||||||| || ||| || Sbjct 3254419 CACTCCATAGGTAACTTCTTTGTTTCCAATCCAACGCAAGGCCCAATCTGCCTTCACCTT 3254478 Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT--TTTTCTATATTATCTCTT 11896 || || |||||||| | || || || | || ||| |||| | |||| | Sbjct 3254479 CACACAAGGCATTGTTTAAGTGGCATTGAAGAGAT--ATTCCCTTTCCTTGGAATCTTTA 3254536 Query 11897 ACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGA 11956 | ||| || || || | | | |||||||||| ||||| || |||||||||| ||||| Sbjct 3254537 ATATAAGTGTCAATGAGGAGATTATACATTTCAGAATGGATGTTTTCCATAGTAATTTGG 3254596 Query 11957 AATCCATAGAAACA 11970 || ||| ||||||| Sbjct 3254597 AAGCCACAGAAACA 3254610 >seq25 Length=39250790 Score = 205 bits (226), Expect = 9e-48 Identities = 496/738 (67%), Gaps = 21/738 (3%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| ||||| | ||||| || | |||| || | || | || | ||||| ||||| | Sbjct 34005955 CACTCCCATTCTCTGATACTCGCCTACTC-TCTTCTCAGAGAAGCTCGTCTTCCCTTCCA 34005897 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 | || || | |||||||||| ||| | || | ||| ||||| | || | | |||| | Sbjct 34005896 GGGAAATGTTCTCCATAAAGTCAAATGAGTTTTCTACTTTGAACATCTTGTTAAAACCCA 34005837 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 || | || || | ||| |||||||| | | ||| | ||| ||| ||||||| Sbjct 34005836 GTTCCAGCATTAGCCTGTTTGCCACGAATTCAACGTGCTGTGTCATCAAAGTGCAATTCA 34005777 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | | || | | ||| | || || | | || |||| |||||| | || |||| Sbjct 34005776 TTTCAATCAACTTCACGGCAAG-GCCTCCATATGGAATTCCTGTTCTATCCTGACAGCAT 34005718 Query 11568 ---CAATGATTATCGACGTTATAACTTC--CTTAGATGGTGGATGTAATAAATGTTTAAA 11622 | |||||| || || || || || || ||| || | | ||||| || Sbjct 34005717 TCACTATGATT-TC----TTGTACTCTCTGCTCTGAAGGTTTGTGCAGCAGGTGTTTGAA 34005663 Query 11623 CATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAA 11682 ||| | || ||||| |||| || ||||| || ||||| || || ||||| || ||||| Sbjct 34005662 CATGAGGCAGGCAAAGTCACCGTGCAAACCCTCATCTCTGCTAATAAGTTCCTTGGAAAA 34005603 Query 11683 TGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGA 11742 || | || ||||| | ||||||||| || | ||| || || | ||||| ||||| || Sbjct 34005602 CGTGAGGCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAAGATGGATGCAAACGAACCGGA 34005543 Query 11743 AAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTG 11800 ||||| || || ||||| |||||||| ||||| |||| ||||| || || ||| || Sbjct 34005542 GAAGAAGATGCCTTCCACTGCTGCAAAGGCTACAACTCGCTCTCCGTAGGTAGCTTCTTT 34005483 Query 11801 CTAGATA-TCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTAT 11859 | | | |||| ||||||||| || ||||| || || || |||||| || || Sbjct 34005482 GTCGCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCAAT 34005423 Query 11860 AGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACT 11919 | || || | || | |||| | | || ||| |||| || || | | ||| Sbjct 34005422 GACATTGAAGAGATACTCCCTTTCCTTGGAACCT-TTA---ATGTGTCAATCAGGAGACT 34005367 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 ||||||||| ||||| || ||||||||||| ||||| || ||||||||||| || ||||| Sbjct 34005366 ATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAACGGGCCTC 34005307 Query 11980 TGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 || | ||| || || ||||| ||| | | ||||||| || || ||||||| Sbjct 34005306 TGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAGGTTCTCATGCACTAT-GCATCACT 34005248 Query 12040 AGATGCAAAAAATGCTAG 12057 | |||||| || || || Sbjct 34005247 GGTTGCAAAGAAAGCCAG 34005230 >seq35 Length=22427959 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || ||||| ||||| ||||||||| Sbjct 206513 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 206572 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | ||| |||| || || ||||||||||| || || || || || Sbjct 206573 GACTCATTATTCCCCAGTATCTGAGCAGTGGAAGCAGTAGGCATCGGGGCAATAAGCAGA 206632 Query 37258 CTATTTCTCAATCCAT 37273 || ||||||| |||| Sbjct 206633 CTGTTTCTCACACCAT 206648 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCG 37413 ||||| || ||||| | | | ||| || || || || || | ||||| ||||| Sbjct 210373 CCTTTGCTGACTGGACAGCCTTCATAGGTTTCGTATGGGCCTTGCTCCTTAGCCAGTTCA 210432 Query 37414 CAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTT 37473 ||||| | ||| | || ||||||| || |||||||||||||| |||| |||| | Sbjct 210433 CAACTGGCTTCCAACGCTCCATAATAAATGGTTTCGAAAATTTGCTTATTCAATAACTGG 210492 Query 37474 GCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACA 37533 || ||| || ||||| | ||| | || || ||||| |||| |||| ||| || || Sbjct 210493 GCCTCTGGACTCTCGAAAGGATACCTCATCAAGATAAAAGCATCTGCCAGACCTTGTACC 210552 Query 37534 CCGATACCTATGGGTCTATGTTTCTTATTAGAT 37566 || || || ||||| | ||| ||||| ||| Sbjct 210553 CCAATTCCAATGGGGCGATGACGTTTATTTGAT 210585 >seq3 Length=92262745 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| |||| | |||| || | Sbjct 36784331 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTCAGTCCCGGCAGAAGACCTCTCTTCT 36784272 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| || || || ||||| ||||| | Sbjct 36784271 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 36784212 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 36784211 CCACCACCCTTTCCCC 36784196 >seq1 Length=111700974 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| || | || ||||| | |||||| || || Sbjct 4139651 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATTAGTCCTCGCTTCTTG 4139592 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || | ||||||||||| || ||||| || || ||||| |||||||| ||| Sbjct 4139591 AGCCAGAAGATGGAGGCAAATGAACCGGAGAAGAAGATGCCTTCCACTGCTGCAAAGGCT 4139532 Query 11774 ACTACTCTTTCTCC 11787 || |||| ||||| Sbjct 4139531 ACAACTCGCTCTCC 4139518 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11917 ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGC 11976 |||||||||||| ||||| || ||||||||||| ||||| || ||||||||||| || || Sbjct 4137851 ACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAGCGGGC 4137792 Query 11977 CTCTGAACACTGTACATC 11994 ||||| | ||| || || Sbjct 4137791 CTCTGTAATCTGAACTTC 4137774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468475593182880