Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq25 123 2e-23 seq51 105 5e-18 >seq25 Length=39250790 Score = 123 bits (136), Expect = 2e-23 Identities = 372/561 (66%), Gaps = 34/561 (6%) Strand=Plus/Plus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| ||||| || | || || |||||||| | |||||| |||||||| || | Sbjct 34005116 ATGTATAAGAAAGCTGAGGCCTCCTTTTGGACGGCCGAGGAGCTGGATCTTTCTAAAGCC 34005175 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGG---TTCATGTCTCACATA 22461 | || ||| ||| |||| || ||||| || ||||| || ||| Sbjct 34005176 ACTCAGCACTGG---GAAGCCCTGA---AGCCTGAGGAGAGAGATTTCATATCCCACGCT 34005229 Query 22462 CTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTCGC 22520 ||||| |||||||||| |||| ||| || || ||||| ||| || |||| || Sbjct 34005230 CTGGCTTTCTTTGCAACCAGTGATG-CATAGTGCATGAGAACCTGGTGGAGCGATTTAGC 34005288 Query 22521 AAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGA 22580 || ||| || | ||| |||| ||| | ||||||||| || || | || ||||| Sbjct 34005289 CAA-GAAGTTCAG---ATTACAGAGGCCCGTTGTTTCTATGGCTTCCAAATTGCTATGGA 34005344 Query 22581 AAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAGAATCA 22640 ||| |||||| |||||||||||| || |||||| ||||||| | | | ||| | Sbjct 34005345 AAACATACATTCTGAAATGTATAGTCTCCTGATTGACACATTAAAGGTTCCAAGGAA--A 34005402 Query 22641 AGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGTGG 22698 | | | | | |||| | ||| ||||| ||||| || |||||| | ||| Sbjct 34005403 GGGAGTA-TCTCTTCAATGTCATTGAGACAATGCCTTGTGTGAAGAAGAAGGCAGATTGG 34005461 Query 22699 GC--TGCACAATGGCTGAAT--GCCACACATAAGTCTA---TCGCAACACGTCTCTTGGC 22751 || ||| | || || || ||| | ||| ||| || | || | | || Sbjct 34005462 GCCTTGC------GTTGGATTGGCGACAAAGAAG-CTACCTACGGAGAGCGAGTTGTAGC 34005514 Query 22752 CTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAA 22811 |||||| || || |||||| || | || || || || ||||| |||| |||||||| || Sbjct 34005515 CTTTGCAGCAGTGGAAGGCATCTTCTTCTCCGGTTCGTTTGCATCCATCTTCTGGCTCAA 34005574 Query 22812 GAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGG 22871 |||||| || |||||||| | |||||||||| || | |||||| | || || || Sbjct 34005575 GAAACGAGGACTAATGCCAGGCCTCACGTTTTCCAAGGAACTTATTAGCAGAGATGAGGG 34005634 Query 22872 TCTACACTGTGACTTTGCTTG 22892 | | ||| |||||||||| || Sbjct 34005635 TTTGCACGGTGACTTTGCCTG 34005655 >seq51 Length=16359109 Score = 105 bits (116), Expect = 5e-18 Identities = 370/562 (66%), Gaps = 33/562 (6%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||| ||||| || | || || |||||||| | |||| ||||||||| || || Sbjct 9672463 ATGTATAAGAAAGCTGAGGCCTCCTTTTGGACGGCCGAGG--GTGGATCTTTCTAAAGAC 9672406 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGG---TTCATGTCTCACATA 22461 | | || ||| ||| ||| || ||||| || ||||| || ||| Sbjct 9672405 ATTCAGCACTGG---GAAGCCCTGC---AGCCTGAGGAGAGAGATTTCATATCCCACGCT 9672352 Query 22462 CTGGCATTCTTTGCAATGGCAG--ATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTC 22518 ||||| ||||||||| | ||| | ||||| || || ||||| ||| || |||| Sbjct 9672351 CTGGCTTTCTTTGCA--GCCAGTGACGGCATCGTGCATGAAAACCTGGTGGAGCGATTTA 9672294 Query 22519 GCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATG 22578 || || || || | ||| |||| ||| | |||||||| || || | |||||| Sbjct 9672293 GCCAA-GACATTCAG---ATTACAGAGGCCCGCTAGTTCTATGGTTTCCAAATTGCAATG 9672238 Query 22579 GAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG--- 22635 || || |||||| |||||||||||| || |||||| ||| | | ||||||| Sbjct 9672237 GATAACATACATTCTGAAATGTATAGTCTCCTGATTGACACTTACAT---TAAAGAGTCC 9672181 Query 22636 -AATCAAGCCGCATTGTTTTCAGCAGCT-GAAGATA-TGCCATGTGTTAAAGCCAAGGCA 22692 || ||| | | ||||| | | ||| | |||| ||||| || |||||| Sbjct 9672180 AAAGAAAGGGAGTATCTCTTCAGTGCCACGGAGACAATGCCTTGTGTGAAGAAGAAGGCA 9672121 Query 22693 CAGTGGGCTGCACAATGGCTGAATGCCACACATAAGT--CTATCGCAACACGTCTCTTGG 22750 | ||||| | ||| | | || | | |||| |||| | | | | | | | Sbjct 9672120 GATTGGGCCTTGCGTTGGATTGGCGACAAAGA-AAGTACCTATGGAGAGA-GAGTTGTAG 9672063 Query 22751 CCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGA 22810 ||||||| || || |||||| || | || || || || ||||| |||| |||||||| | Sbjct 9672062 CCTTTGCAGCAGTGGAAGGCATCTTCTTCTCCGGTTCGTTTGCCTCCATCTTCTGGCTCA 9672003 Query 22811 AGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAG 22870 ||||| | || |||||||| | |||||||||| || | ||| || | || || | Sbjct 9672002 AGAAAGGAGGACTAATGCCAGGCCTCACGTTTTCCAATGAAGTTATTCGCAGAGATGAGG 9671943 Query 22871 GTCTACACTGTGACTTTGCTTG 22892 || | |||||||||||||| || Sbjct 9671942 GTTTGCACTGTGACTTTGCCTG 9671921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356197121902006