Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq8 113 4e-20 seq5 109 5e-19 seq124 95.1 1e-14 seq16 91.5 1e-13 seq4 86.0 6e-12 >seq8 Length=79101790 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||| | || |||||||| || ||||| || || Sbjct 4905330 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAG 4905389 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||||||||||||| | |||||||| ||||| || || || Sbjct 4905390 AGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGA 4905449 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| |||||| ||| | | || | |||||| ||||||| ||| Sbjct 4905450 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 4905509 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||| | |||| || || || || || ||||| Sbjct 4905510 TCAAGGGTGATGGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCAT 4905556 >seq5 Length=88520344 Score = 109 bits (120), Expect = 5e-19 Identities = 155/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGA-ATGTTATAATCGCTCATTGTGCTCG 139607 ||||| || ||||| | || |||||||| || ||||| || || | |||| Sbjct 1010642 ACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGTGATGTTGTAGTCCGAGAGAGTGCAGC 1010701 Query 139608 AGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 || || ||||||||||||||| | |||||| | ||||| || || || ||||| || | Sbjct 1010702 CATCCTCCAGCTGTTTACCAGCAAAAATCAGATGCTGCTGGTCCGGGGGAATGCCCTCCT 1010761 Query 139668 TGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 |||| |||||| ||| | | || | |||||| ||||||||||||||| ||| | Sbjct 1010762 TGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCAAGGGTGA 1010821 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 1010822 TGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1010858 Score = 109 bits (120), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||| | || | |||||| || ||||| || || Sbjct 40362607 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAG 40362666 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||||||||||||| | |||||||| ||||| || || || Sbjct 40362667 AGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGA 40362726 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| |||||| ||| | | || | |||||| | ||||||||| Sbjct 40362727 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCT-GGCTCCACC 40362785 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||| |||| || || || || || ||||| Sbjct 40362786 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATGTGCAT 40362832 >seq124 Length=2835626 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || |||||||| || ||||| || | | ||||| Sbjct 1071996 CGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGACAGTGCTGCCA 1071937 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||||||||||||| | | |||||| | ||| || || || ||||| || ||| Sbjct 1071936 TCCTCCAGCTGTTTACCAGCAAAAACCAGACGCTTCTGGTCCGGGGGAATGCCCTCCTTG 1071877 Query 139670 TCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || || |||| ||||| | | |||| ||||| ||||||||||||||| || | Sbjct 1071876 TCT-TGGGTTTTGGTTTTGACATTCTCCATGGTGTCCCTGGGCTCCACCTCAAGGGCGAT 1071818 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | ||| || || || || || ||||| Sbjct 1071817 GGTCTTGTCCATCAGGGTCTTCACAAACATCTGCAT 1071782 >seq16 Length=57704787 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| |||||| ||||||| | ||||| || ||||| |||||||| ||| Sbjct 36557430 TCTTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 36557489 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| ||| | | | || | ||| | ||||||||||||||| ||| | Sbjct 36557490 TCTTGGATCTTTGCCCTGATATTCTCAATGGTGGCCCTGGGCTCCACCTCAAGGGTGATG 36557549 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||||| || || || ||||| Sbjct 36557550 GTCTTACCAGTTACAGTTTTCACAAAGATCTGCAT 36557584 >seq4 Length=91125384 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || ||||| | || |||||||| || ||||| || || | || | | Sbjct 27213451 ACGCAGCACCAAGTGCAG-GTGGACTCTTTCTGGATGTTGTAGTCCGAGAGTGCGGCCA- 27213508 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || || ||||||||||||||| | ||||||| ||||| || ||| | ||||| || || Sbjct 27213509 -TCCTCCAGCTGTTTACCAGCAAAAATCAGACACTGCTGGTCTGGAAGAATGCCCTCCTT 27213567 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| |||||| ||| | | || | ||| | ||||||| |||||| ||| || Sbjct 27213568 GTCTCGGATTTTAGCTTTGACATTCTCGATGCTGTTGCTGGGCTCAGCCTCAAGGGTGAC 27213627 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||| || || || || | ||||| Sbjct 27213628 GGTCTTGCCCGTCTGGGTCTTCACAAAGACCTGCAT 27213663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496011900878400