Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq51 215 5e-51 seq25 215 5e-51 seq92 199 4e-46 seq24 116 4e-21 seq120 96.9 3e-15 >seq51 Length=16359109 Score = 215 bits (238), Expect = 5e-51 Identities = 492/732 (67%), Gaps = 10/732 (1%) Strand=Plus/Plus Query 13575 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGAT 13634 ||||| | ||||| || | ||||| || ||||||||||| || || |||||||| || Sbjct 9671624 CCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGAC 9671683 Query 13635 ATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCT 13694 || || |||||||| |||||||| ||| | | |||| || | | |||| ||||| Sbjct 9671684 ATGTTCTCCATAAAGTCAAATGGGTTTTCTACTTTGAACAGCTTGTTAAAACCCAGTTCC 9671743 Query 13695 AATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13754 | | || || || || | || ||||| | || | ||| ||| |||||||| || Sbjct 9671744 AGCATTAGCCTGTCTGCCACGAATTCAATGTGCTGTGTCATCAAAGTGCAATTCATTCCA 9671803 Query 13755 ATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTT 13814 || ||||| | || | | || | ||||| | ||||| ||||| | | Sbjct 9671804 ATCAGTTTCAAGGGCAAGGCTTCCGTAAGGAATTCCTGTTCTACTCTGACAGCAT---TC 9671860 Query 13815 ATAATAATTG-TAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 13871 | ||| ||| | || |||| | ||||| | || ||||| || | | Sbjct 9671861 ACAATGATTTCTTGTACTCTCTGCTCTGAAGGTTTGTGCAGCAGGTGTTTGAACACGAGG 9671920 Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| || | ||||||||||| | ||||| ||| || ||||| || | Sbjct 9671921 CAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCGAATAACTTCATTGGAAAACGTGAGG 9671980 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 |||||||| | ||||| ||| || | ||| || || | ||||| || ||||| ||||| Sbjct 9671981 CCTGGCATTAGTCCTCCTTTCTTGAGCCAGAAGATGGAGGCAAACGAACCGGAGAAGAAG 9672040 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT-TTTGTTCGA 14050 || || || ||||| ||||| |||| | || |||||| | | | |||| ||||| Sbjct 9672041 ATGCCTTCCACTGCTGCAAAGGCTACAACTCTCTCTCCATA-GGTACTTTCTTTGTCGCC 9672099 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| ||||| || | || || || | | || |||||| || | ||| | Sbjct 9672100 AATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCCGTGGCACT 9672159 Query 14111 AAATAAATATTCCTTCTCTTTAGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACA 14169 || | ||| ||| | ||||| | ||| | |||||| || ||||| || | ||||||| Sbjct 9672160 GAAGAGATACTCCCTTTCTTT-GGACTCTTTAATGTAAGTGTCAATCAGGAGACTATACA 9672218 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 ||||||| |||||||| ||||| || || || |||||||| || | | || || | Sbjct 9672219 TTTCAGAATGTATGTTATCCATTGCAATTTGGAAACCATAGAACTAGCGGGCCTCTGTAA 9672278 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 || | || | ||||| || ||| ||||||| || || || ||||| |||| Sbjct 9672279 TCTGAATGTCTTGGCTAAATCGCTCCACCAGGTTTTCATGCACGATGCCGTCACTGGCTG 9672338 Query 14290 CAAAAAATGCCA 14301 |||| || |||| Sbjct 9672339 CAAAGAAAGCCA 9672350 >seq25 Length=39250790 Score = 215 bits (238), Expect = 5e-51 Identities = 589/894 (66%), Gaps = 20/894 (2%) Strand=Plus/Minus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 || || |||||| | ||||| || | ||||| || ||| ||||| | || || |||||| Sbjct 34005957 ATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGCTCGTCTTCCCTTCC 34005898 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCT 13688 || || || || |||||||| ||||||| ||| | | |||| || | | |||| Sbjct 34005897 AGGGAAATGTTCTCCATAAAGTCAAATGAGTTTTCTACTTTGAACATCTTGTTAAAACCC 34005838 Query 13689 AGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTC 13748 ||||| | | || || | || | || |||| | || | ||| ||| |||||| Sbjct 34005837 AGTTCCAGCATTAGCCTGTTTGCCACGAATTCAACGTGCTGTGTCATCAAAGTGCAATTC 34005778 Query 13749 ATACCTATTAGTTTTACAGGAAT---TATAT-TGGTTAAAAATTCTTTTTCTATAGACAC 13804 || | || | || || | || | || ||| ||||| | |||||| || Sbjct 34005777 ATTTCAATCAACTTCACGGCAAGGCCTCCATATGG-----AATTCCTGTTCTATCCTGAC 34005723 Query 13805 AGCCTCTTTTATAATAA-TTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAA 13863 ||| | ||| || ||||| | ||| | ||||| | || ||||| | Sbjct 34005722 AGCATTCACTATGATTTCTTGTACTC-TCTGCTCTGAAGGTTTGTGCAGCAGGTGTTTGA 34005664 Query 13864 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13923 | || | || ||||| |||| || | ||||||||||| ||||||||||| || |||| Sbjct 34005663 ACATGAGGCAGGCAAAGTCACCGTGCAAACCCTCATCTCTGCTAATAAGTTCCTTGGAAA 34005604 Query 13924 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGG 13983 | || | |||||||| | ||||||||| || | ||| || || | ||||| || |||| Sbjct 34005603 ACGTGAGGCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAAGATGGATGCAAACGAACCGG 34005544 Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14043 | ||||| || || || ||||| ||||| |||| | ||| ||||| | | |||| || Sbjct 34005543 AGAAGAAGATGCCTTCCACTGCTGCAAAGGCTACAACTCGCTCTCCGTAGGTAGCTTCTT 34005484 Query 14044 TGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAA 14103 ||| ||||| ||||| || | || || || | | || |||||| |||| Sbjct 34005483 TGTCGCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCAA 34005424 Query 14104 TAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 14163 | |||| || | ||| ||| | || || | || | | |||| ||||| || | | Sbjct 34005423 TGACATTGAAGAGATACTCCCTTTCCTTGGAACCT----TTAATGTGTCAATCAGGAGAC 34005368 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223 ||||||||||||| ||||||||||||||||| || || || ||||| || || | || | Sbjct 34005367 TATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAACGGGCCT 34005308 Query 14224 CCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | | || ||||| | ||||| || ||| || |||| ||||| |||||| Sbjct 34005307 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAGGTTCTCATGCACTAT-GCATCAC 34005249 Query 14284 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14343 | | |||||| || |||| || || || | | ||| ||| || || || Sbjct 34005248 TGGTTGCAAAGAAAGCCAGAGCGTGGGATATGAAATCTCTCTCCTCAGGCTTCAGGGCTT 34005189 Query 14344 TCCAATCGGATAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 ||| | | | | | | ||||||||||| | || || | |||||||| || | Sbjct 34005188 CCCAGT--GCTGAGTGGCTTTAGAAAGATCCAGCTCCTCGGCCGTCCAAAAGGAGGCCTC 34005131 Query 14402 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 |||||| |||||||| ||| || || | || || ||||| || ||||| Sbjct 34005130 AGCTTTCTTATACATCTGCCAAATGTCATGGTACTCGATGGGAAAGACAACAAA 34005077 >seq92 Length=6660306 Score = 199 bits (220), Expect = 4e-46 Identities = 455/682 (67%), Gaps = 6/682 (1%) Strand=Plus/Plus Query 13534 CATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCAC 13593 ||||||| | ||| ||| || || | | || || || ||||| || | || || | Sbjct 3253935 CATCTAAGGTAAAGGAATTCTCTGTTTGGCTTGACATCACTCCCATCTTCTAGTACTCGC 3253994 Query 13594 TAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAA 13653 ||||| || ||||||||||| || || |||||||| || || || |||||||| |||| Sbjct 3253995 CTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGAAATGTTCTCCATAAAGTCAA 3254054 Query 13654 ATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAA 13713 |||| ||| | | |||| || | |||| | ||| | | || || || || | Sbjct 3254055 ATGGGTTTTCTACTTTGAACATCTTGTTGAAACCCAATTCCAGTGTTAGCCTGTCTGCCA 3254114 Query 13714 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13773 || ||||| || | | ||||||| |||||||| || || || || || | | Sbjct 3254115 CGAATTCAATGTACTATGTCATTAAAGTGCAATTCATTCCAATCAGCTTCACGTGCAGGG 3254174 Query 13774 TATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT 13833 | || | ||||| | |||| | ||||| | | || | ||||| | ||| Sbjct 3254175 CCTCCGTCAGGAATTCCTGTTCTCTCCTGACAGCATTCATGAT--TTCTTGTACTC-TCT 3254231 Query 13834 CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13893 | ||||| || || ||||| || | | || ||||||||||| || | | Sbjct 3254232 GCTCCGAAGGGTTGTACAGCAGGTGTTTGAACACGAGGCAGGCAAAATCACATTGCAAAC 3254291 Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || ||||||| | || ||||| | ||||||||| | Sbjct 3254292 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGAGAGGCCAGGCATTAGTCCTCGTTTCT 3254351 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || || | |||||||| || | |||| ||||| || |||| ||||| | Sbjct 3254352 TGAGCCAGAAAATGGATGCAAATGAACC---AGAGAAGATTCCTTCCACTGTCGCAAAGG 3254408 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 ||| | ||| ||||| | | ||| |||||| ||||| ||||| || | Sbjct 3254409 CTACAACTCGCACTCCATAGGTAACTTCTTTGTTTCCAATCCAACGCAAGGCCCAATCTG 3254468 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAG 14133 || || | | || |||||||| | | ||||| || | ||||||| | || || | Sbjct 3254469 CCTTCACCTTCACACAAGGCATTGTTTAAGTGGCATTGAAGAGATATTCCCTTTCCTTGG 3254528 Query 14134 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAG 14193 | | ||| || || ||||| || | ||||||||||||| || ||||||||||||| Sbjct 3254529 AATCTTTAATATAAGTGTCAATGAGGAGATTATACATTTCAGAATGGATGTTTTCCATAG 3254588 Query 14194 CTATCTGAAAACCATAAAAGCA 14215 || || || ||| | || || Sbjct 3254589 TAATTTGGAAGCCACAGAAACA 3254610 >seq24 Length=44670279 Score = 116 bits (128), Expect = 4e-21 Identities = 234/342 (68%), Gaps = 9/342 (3%) Strand=Plus/Minus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || ||| | || |||| || ||||| |||| ||| ||||||||||| ||||||||| Sbjct 21210701 AGGTGTGTGAACATTAGGCAGGCAAAGTCACGGTGAGAACCCTCATCTCTGCTAATAAGT 21210642 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 | || |||||| | | |||| | |||||||||| | | || ||||||| ||| Sbjct 21210641 CCATTGACAAATGTGAGGCTTGGCTTTAATCCTCGTTCGGTGAGCCGGAATATTGATGCA 21210582 Query 13974 AATG----ACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 || | | || |||||||| ||||| | |||| ||||| ||| | ||||| Sbjct 21210581 AAAGAACTAACCAGAAAAGAAGATTCCTCCTCCTGCGGCAAAGACTACCACATACTCTCC 21210522 Query 14030 AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAA 14089 | | | ||||| |||| | ||||| || | |||| || | | || || ||| | Sbjct 21210521 ACAGGCAGCTTTGTTGTGCCCGATCCA-TTGGAAACCCAATCTGTCTCCTTCTTCATACA 21210463 Query 14090 ATCCATTGTTTCAATAGCATTAAATAAATA--TTCCTTCTCTTTAGTACTTGAAATGTAT 14147 |||| | ||||| |||||| | ||| || ||| | ||| ||| ||||| Sbjct 21210462 CGGCATTATCTCAATGGCATTACCGAGATAGCCTCTTTCCTTGGAGT-CTT-CAATGTCA 21210405 Query 14148 GTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCC 14189 || |||| ||| | |||||||||||||| |||||||||||| Sbjct 21210404 GTGTCAACAAGGAGACTATACATTTCAGAATGTATGTTTTCC 21210363 >seq120 Length=3276030 Score = 96.9 bits (106), Expect = 3e-15 Identities = 240/363 (66%), Gaps = 20/363 (6%) Strand=Plus/Minus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || ||||| || || || ||||| ||||| || | | ||||||||| |||| |||| Sbjct 2356091 AGGTGTTTGAACATGGGGCAAGCAAAGTCACAGTGCAAACTCTCATCTCTGCTAAGAAGT 2356032 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || ||||||| | || | ||| | |||| | ||| | |||| ||| Sbjct 2356031 ATATTGGAAAATG--AGGCCAGACATTAGTCCTTG---------CCAGTAGATTGATGCA 2355983 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGT-------TC 14026 ||||| | |||| | ||||| || ||| ||||| |||| | | | Sbjct 2355982 AATGAATTAGGAAAGTAGATTCCTTCCGCTGTGGCAAAGGCTACAACACACAGCACACTG 2355923 Query 14027 TCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14085 |||| | | |||| ||||| || | ||||| | | ||| || | || || || | Sbjct 2355922 TCCATAGGTAGCTTCTTTGTCTCCA-ATCCAATGCAAGGTCCAATCTGCCTTCTTCTTCA 2355864 Query 14086 TAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGT 14145 | || |||| | | ||| ||| | || | ||||||| | ||||| | | || ||| | Sbjct 2355863 CACAAGGCATTTTCTTAATGGCACTGAAGAGATATTCCCTTTCTTTGGAATTTTTAATCT 2355804 Query 14146 ATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAAC 14205 | | ||||||||||| | ||||||||| || ||||||||||||||||| || || || | Sbjct 2355803 AAGCATCAATAAGTAGACCATACATTTCTGACTGTATGTTTTCCATAGCAATTTGGAAGC 2355744 Query 14206 CAT 14208 ||| Sbjct 2355743 CAT 2355741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479677616566800