Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq51 203 3e-47 seq25 196 5e-45 seq92 179 4e-40 >seq51 Length=16359109 Score = 203 bits (224), Expect = 3e-47 Identities = 489/732 (67%), Gaps = 10/732 (1%) Strand=Plus/Plus Query 13363 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGAT 13422 ||||| | ||||| || | ||||| || ||||| ||||| || || |||||||| || Sbjct 9671624 CCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGAC 9671683 Query 13423 ATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCT 13482 || || |||||||| || ||||| ||| | | |||| || | | |||| ||||| Sbjct 9671684 ATGTTCTCCATAAAGTCAAATGGGTTTTCTACTTTGAACAGCTTGTTAAAACCCAGTTCC 9671743 Query 13483 AATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13542 | | || || || || | || ||||| | || | ||| ||| |||||||| || Sbjct 9671744 AGCATTAGCCTGTCTGCCACGAATTCAATGTGCTGTGTCATCAAAGTGCAATTCATTCCA 9671803 Query 13543 ATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTT 13602 || ||||| | || | | || | ||||| | ||||| ||||| | | Sbjct 9671804 ATCAGTTTCAAGGGCAAGGCTTCCGTAAGGAATTCCTGTTCTACTCTGACAGCAT---TC 9671860 Query 13603 ATAATAATCT-TAATAATGTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 13659 | ||| || | | || | || | ||||| | || ||||| || | | Sbjct 9671861 ACAATGATTTCTTGTACTCTCTGCTCTGAAGGTTTGTGCAGCAGGTGTTTGAACACGAGG 9671920 Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| || | ||||||||||| | ||||| ||| || ||||| || | Sbjct 9671921 CAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCGAATAACTTCATTGGAAAACGTGAGG 9671980 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 |||||||| | ||||| ||| || | ||| || || | || || || ||||| ||||| Sbjct 9671981 CCTGGCATTAGTCCTCCTTTCTTGAGCCAGAAGATGGAGGCAAACGAACCGGAGAAGAAG 9672040 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT-TTTGTTTGA 13838 || || || ||||| ||||| |||| | || |||||| | | | |||| ||||| Sbjct 9672041 ATGCCTTCCACTGCTGCAAAGGCTACAACTCTCTCTCCATA-GGTACTTTCTTTGTCGCC 9672099 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| ||||| || | || || || | | || |||||| || | ||| | Sbjct 9672100 AATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCCGTGGCACT 9672159 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACT-TGAAATGTATGTATCAATAAGTAAGCTATACA 13957 ||| | || ||| | ||||| | ||| | |||||| || ||||| || | ||||||| Sbjct 9672160 GAAGAGATACTCCCTTTCTTT-GGACTCTTTAATGTAAGTGTCAATCAGGAGACTATACA 9672218 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14017 ||||||| |||||||| || || || || || |||||||| || | | || |||| Sbjct 9672219 TTTCAGAATGTATGTTATCCATTGCAATTTGGAAACCATAGAACTAGCGGGCCTCTGTAA 9672278 Query 14018 ATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 || | || | ||||| || ||| |||||||| || || || ||||| |||| Sbjct 9672279 TCTGAATGTCTTGGCTAAATCGCTCCACCAGGTTTTCATGCACGATGCCGTCACTGGCTG 9672338 Query 14078 CAAAAAATGCCA 14089 |||| || |||| Sbjct 9672339 CAAAGAAAGCCA 9672350 >seq25 Length=39250790 Score = 196 bits (216), Expect = 5e-45 Identities = 408/604 (68%), Gaps = 9/604 (1%) Strand=Plus/Minus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || ||||| || || | || ||||| |||| || | ||||||||||| ||||||||| Sbjct 34005673 AGGTGTTTGAACATGAGGCAGGCAAAGTCACCGTGCAAACCCTCATCTCTGCTAATAAGT 34005614 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || ||||| || | |||||||| | ||||||||| || | ||| || || | || Sbjct 34005613 TCCTTGGAAAACGTGAGGCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAAGATGGATGCA 34005554 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || ||||| ||||| || || || ||||| ||||| |||| | ||| ||||| | Sbjct 34005553 AACGAACCGGAGAAGAAGATGCCTTCCACTGCTGCAAAGGCTACAACTCGCTCTCCGTAG 34005494 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | |||| ||||| ||||| ||||| || | || || || | | || | Sbjct 34005493 GTAGCTTCTTTGTCGCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGC 34005434 Query 13882 ATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 13941 ||||| || || ||||||| | || ||| | || || | || | | |||| ||| Sbjct 34005433 ATTGTCTCAATGACATTGAAGAGATACTCCCTTTCCTTGGAACCT----TTAATGTGTCA 34005378 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 || || | |||||||||||||| ||||||||||| ||||| || || || ||||| ||| Sbjct 34005377 ATCAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAA 34005318 Query 14002 CATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACA 14061 || | || |||| || || || | ||||| || ||| ||| |||| || Sbjct 34005317 CAACGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAGGTTCTCATGCACT 34005258 Query 14062 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14121 || ||||||| | |||||| || |||| || || || | | ||| ||| Sbjct 34005257 AT-GCATCACTGGTTGCAAAGAAAGCCAGAGCGTGGGATATGAAATCTCTCTCCTCAGGC 34005199 Query 14122 TTGAGTTTTTTCCAATCGGCTAAAT--CCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14179 || || || ||| | ||| | | | ||||||||||| | || || | ||||||| Sbjct 34005198 TTCAGGGCTTCCCAGT--GCTGAGTGGCTTTAGAAAGATCCAGCTCCTCGGCCGTCCAAA 34005141 Query 14180 AACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTA 14239 | || ||||||| |||||||| ||| || || | || || ||||| || | Sbjct 34005140 AGGAGGCCTCAGCTTTCTTATACATCTGCCAAATGTCATGGTACTCGATGGGAAAGACAA 34005081 Query 14240 CAAA 14243 |||| Sbjct 34005080 CAAA 34005077 >seq92 Length=6660306 Score = 179 bits (198), Expect = 4e-40 Identities = 453/684 (66%), Gaps = 10/684 (1%) Strand=Plus/Plus Query 13322 CATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCAC 13381 ||||||| | ||| ||| || || | | || || || ||||| || | || || | Sbjct 3253935 CATCTAAGGTAAAGGAATTCTCTGTTTGGCTTGACATCACTCCCATCTTCTAGTACTCGC 3253994 Query 13382 TAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGA 13441 ||||| || ||||| ||||| || || |||||||| || || || |||||||| || | Sbjct 3253995 CTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGAAATGTTCTCCATAAAGTCAA 3254054 Query 13442 ATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAA 13501 |||| ||| | | |||| || | |||| | ||| | | || || || || | Sbjct 3254055 ATGGGTTTTCTACTTTGAACATCTTGTTGAAACCCAATTCCAGTGTTAGCCTGTCTGCCA 3254114 Query 13502 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13561 || ||||| || | | ||||||| |||||||| || || || || || | | Sbjct 3254115 CGAATTCAATGTACTATGTCATTAAAGTGCAATTCATTCCAATCAGCTTCACGTGCAGGG 3254174 Query 13562 TATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGT 13621 | || | ||||| | |||| | ||||| | | || || |||| || | | Sbjct 3254175 CCTCCGTCAGGAATTCCTGTTCTCTCCTGACAGCAT---TCATGATT-TCTTG-TACTCT 3254229 Query 13622 CA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAG 13679 | | ||||| || || ||||| || | | || ||||||||||| || | Sbjct 3254230 CTGCTCCGAAGGGTTGTACAGCAGGTGTTTGAACACGAGGCAGGCAAAATCACATTGCAA 3254289 Query 13680 GCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 ||||||||||| ||||||||||| || ||||||| | || ||||| | ||||||||| Sbjct 3254290 ACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGAGAGGCCAGGCATTAGTCCTCGTTT 3254349 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 || | ||| || || | || ||||| || | |||| ||||| || |||| ||||| Sbjct 3254350 CTTGAGCCAGAAAATGGATGCAAATGAACC---AGAGAAGATTCCTTCCACTGTCGCAAA 3254406 Query 13800 CGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTC 13859 |||| | ||| ||||| | | ||| ||||||| ||||| ||||| || Sbjct 3254407 GGCTACAACTCGCACTCCATAGGTAACTTCTTTGTTTCCAATCCAACGCAAGGCCCAATC 3254466 Query 13860 AGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTT 13919 | || || | | || |||||||| | |||||||| | || |||| | || || Sbjct 3254467 TGCCTTCACCTTCACACAAGGCATTGTTTAAGTGGCATTGAAGAGATATTCCCTTTCCTT 3254526 Query 13920 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTAT 13979 | | | ||| || || ||||| || | ||||||||||||| || |||||||| || Sbjct 3254527 GGAATCTTTAATATAAGTGTCAATGAGGAGATTATACATTTCAGAATGGATGTTTTCCAT 3254586 Query 13980 AGCTATCTGAAAACCATAAAAACA 14003 || || || || ||| | ||||| Sbjct 3254587 AGTAATTTGGAAGCCACAGAAACA 3254610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478538536211280