Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq51 170 3e-37 seq25 143 4e-29 seq35 95.1 2e-14 seq92 87.8 3e-12 >seq51 Length=16359109 Score = 170 bits (188), Expect = 3e-37 Identities = 570/876 (65%), Gaps = 22/876 (3%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||||||| ||| |||| ||||||| | ||||| || || ||| |||||||||||||| Sbjct 9672493 TTTCCCATCGAGTACCATGGCATTTGGCAGATGTATAAGAAAGCTGAGGCCTCCTTTTGG 9672434 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||| ||| ||| ||||| || || ||| | | | ||||| | | | |||| Sbjct 9672433 ACGGCCGA--GGGTGGATCTTTCTAAAGACATTCAGCACTGGGAAGCCCTGCAGCCTGA- 9672377 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| |||| || ||||| ||| | |||| |||||||| | | || || ||||| Sbjct 9672376 --GGAGAGAGATTTCATATCCCACGCTCTGGCTTTCTTTGCAGCCAGTGACGGCATCGTG 9672319 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT 125237 | || || ||| || ||||| ||||| | ||| |||||| | || Sbjct 9672318 CATGAAAACCTGGTGGAGCGATTTAGCCAAGACATTCAGATTACAGAGGCCCGCTAGTTC 9672259 Query 125238 TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGAC 125297 || || |||||||| || || ||| | || || |||||||| | ||||||||| Sbjct 9672258 TATGGTTTCCAAATTGCAATGGATAACATACATTCTGAAATGTATAGTCTCCTGATTGAC 9672199 Query 125298 ATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGCC 125356 | |||||| || | ||| | || | ||||| | || | || || |||| Sbjct 9672198 ACTTACATTAAAGAGTC-CAAAGAAAGGGAGTATCTCTTCAGTGCCACGGAGACAATGCC 9672140 Query 125357 GTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTA 125416 | | | || ||||| | |||| | || ||||| | ||| | | | | || Sbjct 9672139 TTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGTTGGATTGGCGACAAAGAAAGTACCTA 9672080 Query 125417 CGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGC 125476 | || ||| | || || || || || || || ||||||||||| || ||| ||||| Sbjct 9672079 TGGAGAGAGAGTTGTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCCGGTTCGTTTGC 9672020 Query 125477 GGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTT 125536 ||||||| ||||||||||| | ||||| ||||| || || ||| || || | Sbjct 9672019 CTCCATCTTCTGGCTCAAGAAAGGAGGACTAATGCCAGGCCTCACGTTTTCCAATGAAGT 9671960 Query 125537 TATATCTC-GAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 ||| || | |||| ||||| | ||||||||||||||| || |||| ||| | | Sbjct 9671959 TAT-TCGCAGAGATGAGGGTTTGCACTGTGACTTTGCCTGCCTCGTGTT---CAAACACC 9671904 Query 125596 TGCGTCCCGA--GTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGT 125653 ||| | | | | |||| ||| || | ||| | |||||| | |||| || Sbjct 9671903 TGCTGCACAAACCTTCAGA-GCAGAGAGTACAAG----AAATCATTGTGA---ATGCTGT 9671852 Query 125654 GAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG 125713 || ||||||| || || || || ||| || | || | | ||||||| ||||| || Sbjct 9671851 CAGAGTAGAACAGGAATTCCTTACGGAAGCCTTGCCCTTGAAACTGATTGGAATGAATTG 9671792 Query 125714 CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG 125773 || | ||| || |||| || || |||||||| | ||| || || || | Sbjct 9671791 CACTTTGATGACACAGCACATTGAATTCGTGGCAGACAGGCTAATGCTGGAACTGGGTTT 9671732 Query 125774 CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 |||| | | ||| | | || || ||||| || ||| | ||| || || || || Sbjct 9671731 TAACAAGCTGTTCAAAGTAGAAAACCCATTTGACTTTATGGAGAACATGTCCCTGGAAGG 9671672 Query 125834 TAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 ||||| ||||| || ||||||| || ||||||| Sbjct 9671671 GAAGACGAACTTCTTTGAGAAGAGAGTAGGCGAGTA 9671636 >seq25 Length=39250790 Score = 143 bits (158), Expect = 4e-29 Identities = 383/578 (66%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||||||| ||| |||||||||||| | ||||| || || ||| |||||||||||||| Sbjct 34005086 TTTCCCATCGAGTACCATGACATTTGGCAGATGTATAAGAAAGCTGAGGCCTCCTTTTGG 34005145 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 |||| ||| ||| | ||||| || || | | | | ||||| | | | |||| Sbjct 34005146 ACGGCCGAGGAGCTGGATCTTTCTAAAGCCACTCAGCACTGGGAAGCCCTGAAGCCTGA- 34005204 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| |||| || ||||| ||| | |||| |||||||| | ||| | || || Sbjct 34005205 --GGAGAGAGATTTCATATCCCACGCTCTGGCTTTCTTTGCAACCAGTGAT-GCATAGTG 34005261 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTT 125236 | || || ||| || ||||| |||| |||| | ||| |||||| || || Sbjct 34005262 CATGAGAACCTGGTGGAGCGATTTAGCCAAGAAGTTCA-GATTACAGAGGCCCGTTGTTT 34005320 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||||||| || || ||| | || || |||||||| | |||||||| Sbjct 34005321 CTATGGCTTCCAAATTGCTATGGAAAACATACATTCTGAAATGTATAGTCTCCTGATTGA 34005380 Query 125297 CATGTACATTCGCGATCCGCAACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGC 125355 | ||||| | | | ||| | || | ||||| || | || || || ||| Sbjct 34005381 C----ACATTAAAGGTTC-CAAGGAAAGGGAGTATCTCTTCAATGTCATTGAGACAATGC 34005435 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | || ||||| | |||| | || ||||| | ||| | | || | | Sbjct 34005436 CTTGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGTTGGATTGGCGACAAAGAAGCTACCT 34005495 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 ||| || || | || || || || || || || ||||||||||| || ||| |||| Sbjct 34005496 ACGGAGAGCGAGTTGTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCCGGTTCGTTTG 34005555 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | ||||||| ||||||||||| || ||||| ||||| || || ||| || || Sbjct 34005556 CATCCATCTTCTGGCTCAAGAAACGAGGACTAATGCCAGGCCTCACGTTTTCCAAGGAAC 34005615 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||| |||| ||||| | ||| ||||||||||| Sbjct 34005616 TTATTAGCAGAGATGAGGGTTTGCACGGTGACTTTGCC 34005653 >seq35 Length=22427959 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | ||||| |||||| || || |||||||| |||||||| Sbjct 214780 CTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGGACCCCGTACATGCTCTACAAA 214721 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| | || || || |||||||| | || ||||||||||||| || ||| ||| Sbjct 214720 GATTCTTGTAACCGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAAAGCAGCAACCTG 214661 Query 97299 TGCACGGAAATTGTAGAGTA 97318 ||||| ||||| |||||||| Sbjct 214660 TGCACAGAAATAGTAGAGTA 214641 >seq92 Length=6660306 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 124989 TTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCC 125048 |||| | | ||||| | | ||| |||||||||||| | ||||| || || ||| |||| Sbjct 3254822 TTTATCATCTTTCCTACCGAGTACCATGACATTTGGCAGATGTATAAGAAAGCTGAGGCT 3254763 Query 125049 TCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGA 125086 ||||||||||||| ||| ||||| |||||||| || || Sbjct 3254762 TCCTTTTGGACGGCCGAGGAGGTGGATCTGTCTAACGA 3254725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740981370257520