Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 seq8 82.4 6e-11 seq1 82.4 6e-11 >seq5 Length=88520344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGA-ATATTGTAATCCGCCATTGTTTTGGCGTCCT 18890 ||||| ||||| || ||||| || || || ||||| |||| | || | | |||| Sbjct 1010648 CACCAAGTGCAGGGTGGACTCTTTCTGTGATGTTGTAGTCCGAGAGAGTGCAGCCATCCT 1010707 Query 18891 CCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGG 18950 ||||||||||||| ||| |||| || |||||| ||| ||| | |||||| ||||| Sbjct 1010708 CCAGCTGTTTACCAGCAAAAATCAGATGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTT 1010767 Query 18951 CAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTT 19010 ||||| ||| || | ||| || |||| |||||| || | ||| ||||| | Sbjct 1010768 GGATTTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTCT 1010827 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 | ||||| | || || ||||| || |||||| Sbjct 1010828 TGCCTGTCAGGGTCTTCACAAAGATCTGCATT 1010859 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || | ||| || || || ||||| |||| | || | | ||||| Sbjct 40362624 CACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTC 40362683 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||||||| ||| |||| || | |||||| ||| ||| | |||||| ||||| Sbjct 40362684 CAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTG 40362743 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || | ||| || ||| | |||||| || | ||| ||||| || Sbjct 40362744 GATTTTGGCTTTGACATTCTCGATGGTGTCG-CTGGCTCCACCTCAAGGGTGATGGTCTT 40362802 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || || | || || ||||| || ||||| || Sbjct 40362803 GCCCGTCAGGGTCTTCACAAAGATGTGCATGTT 40362835 >seq8 Length=79101790 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||| || || || ||||| ||| | || | | ||||| Sbjct 4905347 CACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAGAGAGTGCGGCCATCCTC 4905406 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||||||| ||| |||| || | |||||| ||| ||| | |||||| ||||| Sbjct 4905407 CAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTG 4905466 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || | | | || |||| ||||| || | ||| ||||| || Sbjct 4905467 GATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTT 4905526 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 | || | || || ||||| || ||||| || Sbjct 4905527 GGCCGTCAGGGTCTTCACAAAGATCTGCATGTT 4905559 >seq1 Length=111700974 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||| || || || |||||||||| | || | | ||||| Sbjct 26898470 CACCAAGTGCAGGGTCGACTC-TTCTGGATGTTGTAATCCGAGAGTGCG--GCCATCCTC 26898526 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||||||| || ||| |||| || | |||||| | ||| | |||||| ||||| Sbjct 26898527 CAGCTGTTTCCCAGCAAAAATCAGACGCTGCTGGT-TGGGGGAATGCCCTCCTTGTCTTG 26898585 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || | ||| || |||| |||||| || | ||| ||||| || Sbjct 26898586 GATTTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCCCCTCAAGGGTGATGGTCTT 26898645 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 |||| | || || ||||| || ||||| || Sbjct 26898646 GCCTGCCAGGGTCTTCACAAAGATGTGCATCTT 26898678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414530348004388