Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq51 228 7e-55 seq25 210 2e-49 seq92 179 3e-40 seq3 105 6e-18 seq1 91.5 1e-13 >seq51 Length=16359109 Score = 228 bits (252), Expect = 7e-55 Identities = 580/873 (66%), Gaps = 22/873 (3%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| |||| ||||| || ||||| ||||| || || ||||| | || || || ||| Sbjct 9671633 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGACATGTTCTCC 9671692 Query 12923 ATAAAATCGAAAGGATTTT-----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTA 12977 ||||| || || || |||| | ||||| || ||| | || | ||| || | Sbjct 9671693 ATAAAGTCAAATGGGTTTTCTACTTTGAACAGC-----TTGTTAAAACCCAGTTCCAGCA 9671747 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 | ||||| || || || || |||| |||| |||| ||| || |||||||| || | Sbjct 9671748 TTAGCCTGTCTGCCACGAATTCAATGTGCTGTGTCATCAAAGTGCAATTCATTCCAATCA 9671807 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 ||| | |||| ||||| || | || | | ||||| || || | | || | Sbjct 9671808 GTTTCAAGGGCAAGGCTTCCGTAAGGAATTCCTGTTCTACTCTGACAGCATTCACAATGA 9671867 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATGCTTAAACATCATACATG 13154 | ||| || | | |||| | ||| || || || || || |||| | || | Sbjct 9671868 TTTCTTGTACTCTCTGCTCTGA---AGGTTTGTGCAGCAGGTGTTTGAACACGAGGCAGG 9671924 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||| ||||||||||| || |||||||| | || | || || ||||| || || || | Sbjct 9671925 CAAAGTCACAGTGCAAACCCTCATCTCTGCGAATAACTTCATTGGAAAACGTGAGGCCTG 9671984 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| || |||| ||| || | ||| || || | ||||||||||| || || || || | Sbjct 9671985 GCATTAGTCCTCCTTTCTTGAGCCAGAAGATGGAGGCAAACGAACCGGAGAAGAAGATGC 9672044 Query 13275 CTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATC 13333 |||| ||||||||||| |||| |||| || || ||||| ||||| | ||| | ||| Sbjct 9672045 CTTCCACTGCTGCAAAGGCTA-CAACTCTCTCTCCATAGGTACTTTCTTTGTCGCCAATC 9672103 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || |||||| | ||| || | || || || ||| | || | || | || Sbjct 9672104 CAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCCGTGGCACTGAAG 9672163 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 | ||| | |||| || ||| ||| ||||| || |||| | ||||||||||| Sbjct 9672164 AGATACTCCCTTTCTTTGGACTCTTTAATGTAAGTGTCAATCAGGAGACTATACATTTCA 9672223 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 ||||| || || ||||| || |||||||||||||| || | | ||||||| | |||| Sbjct 9672224 GAATGTATGTTATCCATTGCAATTTGGAAACCATAGAACTAGCGGGCCTCTGTAATCTGA 9672283 Query 13514 ACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 | || | ||||| || | | |||||| | || || |||||||| || ||||| Sbjct 9672284 ATGTCTTGGCTAAATCGCTCCACCAGGTTTTCATGCACGATGCCGTCACTGGCTGCAAAG 9672343 Query 13574 aaaGCAAGTATGT-GCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGG 13632 ||||| || || | || |||| | | | | ||| || | ||| | | Sbjct 9672344 AAAGCCAGAGCGTGGGATATGAAATCTCTCTCCTCAGGCTG-CAGGGCTTCCCAGTGCTG 9672402 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 || ||||| || | ||| || |||| | |||||||| || || |||| |||||||| Sbjct 9672403 AATGTCTTTAGAAAGATCCAC--CCTCGGCCGTCCAAAAGGAGGCCTCAGCTTTCTTATA 9672460 Query 13693 CATCATCCATATATCCTTATAAACAATGGGAAA 13725 |||| ||| || | | || | |||||||| Sbjct 9672461 CATCTGCCAAATGCCATGGTACTCGATGGGAAA 9672493 >seq25 Length=39250790 Score = 210 bits (232), Expect = 2e-49 Identities = 590/887 (67%), Gaps = 28/887 (3%) Strand=Plus/Minus Query 12856 CATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAAT 12915 |||| | ||||| |||| ||||| || ||| | ||| | || || ||||| | ||||| Sbjct 34005949 CATTCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGCTCGTCTTCCCTTCCAGGGAAAT 34005890 Query 12916 ATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTT-TTACACCCTAATTCTA 12974 || |||||||| || ||| || ||||| | | || || ||| | || | ||| | Sbjct 34005889 GTTCTCCATAAAGTC-AAATGAGTTTTCTACTTTGAACATCTTGTTAAAACCCAGTTCCA 34005831 Query 12975 GTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTA 13034 | | | |||| || || || || | || |||| |||| ||| || |||||| | | Sbjct 34005830 GCATTAGCCTGTTTGCCACGAATTCAACGTGCTGTGTCATCAAAGTGCAATTCATTTCAA 34005771 Query 13035 TTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAA 13094 | || || || |||| || || | || | | |||||| || || | | | Sbjct 34005770 TCAACTTCAC-GGCAAGGCCTCCATATGGAATTCCTGTTCTATCCTGACAGCAT---TCA 34005715 Query 13095 CTATG-TCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATGCTTAAACATCATA 13150 ||||| | |||| | || ||| || ||| || || || || || ||||| | Sbjct 34005714 CTATGATTTCTTGT-ACTCTCTGCTCTGAAGGTTTGTGCAGCAGGTGTTTGAACATGAGG 34005656 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| |||| |||||| || |||||||| || || || || || ||||| || || Sbjct 34005655 CAGGCAAAGTCACCGTGCAAACCCTCATCTCTGCTAATAAGTTCCTTGGAAAACGTGAGG 34005596 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 || ||||| || |||||||| || | ||| || || | ||||||||||| || || || Sbjct 34005595 CCTGGCATTAGTCCTCGTTTCTTGAGCCAGAAGATGGATGCAAACGAACCGGAGAAGAAG 34005536 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTA-CTATTTTTACTCT 13328 || ||||| ||||||||||| |||| |||| | || || || ||| || ||| | | Sbjct 34005535 ATGCCTTCCACTGCTGCAAAGGCTA-CAACTCGCTCTCCGTAGGTAGCTTCTTTGTCGC- 34005478 Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGT 13388 | ||||| |||||| | ||| || | || || || ||| | || || | | Sbjct 34005477 CAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCAATGACAT 34005418 Query 13389 TAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACA 13448 | || | ||| | ||||||| || ||| || || |||| | ||||||| Sbjct 34005417 TGAAGAGATACTCCCTTTCCTTGGAACCTTTAAT----GTGTCAATCAGGAGACTATACA 34005362 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| ||||| || |||||||| || |||||||| ||||| ||||| | ||||||| | Sbjct 34005361 TTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAACGGGCCTCTGTAA 34005302 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 ||||||||| | ||||| || | | ||| || | ||||| | ||||| | | Sbjct 34005301 TCTGAACTTCTTGGCTAAATCGCTCCACCAGGTTCTCATGCACTAT-GCATCACTGGTTG 34005243 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAAC 13624 |||| ||||| || ||| || || | | | || | ||| | ||| | Sbjct 34005242 CAAAGAAAGCCAGAGCGTGGGATATGAAATCTCTCTCCTCAGGCTTC--AGGGCTT--CC 34005187 Query 13625 CAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCC 13684 || | || |||| || | ||| | |||||| | |||||||| || || |||| Sbjct 34005186 CAGTGCTGAGTGGCTTTAGAAAGATCCAGCTCCTCGGCCGTCCAAAAGGAGGCCTCAGCT 34005127 Query 13685 TTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 |||||||||||| ||| || || | || | |||||||| ||||| Sbjct 34005126 TTCTTATACATCTGCCAAATGTCATGGTACTCGATGGGAAAGACAAC 34005080 >seq92 Length=6660306 Score = 179 bits (198), Expect = 3e-40 Identities = 571/876 (65%), Gaps = 56/876 (6%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| || | || |||| ||||| || ||||| ||||| || || | Sbjct 3253965 TTGACATCACTCCCATCTTCTAGTACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCC 3254024 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT-----TCGAACAATAGTATTT 12957 |||| | ||||| || |||||||| || || || |||| | ||||| | || Sbjct 3254025 CTTCCAGGGAAATGTTCTCCATAAAGTCAAATGGGTTTTCTACTTTGAACA----TCTTG 3254080 Query 12958 TTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAA 13017 || | |||| ||||| ||| | ||||| || || || || ||||||| | ||||||| Sbjct 3254081 TTGAAACCC-AATTCCAGTGTTAGCCTGTCTGCCACGAATTCAATGTACTATGTCATTAA 3254139 Query 13018 ATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTAT 13077 | || |||||||| || | || || ||| || || || | || | | |||| | Sbjct 3254140 AGTGCAATTCATTCCAATCAGCTTCACGTGCAGGGCCTCCGTCAGGAATTCCTGTTCTCT 3254199 Query 13078 ATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAAT--GGAGGATTTGATAGA 13135 || || | || | | |||| | || ||||| | | ||| || | || Sbjct 3254200 CCTGACAGCATTCATGATT-----TCTTGT-AC--TCTCTGCTCCGAAGGGTTGTACAGC 3254251 Query 13136 ---TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 || || |||| | || ||||||||||| ||||| || |||||||| || || || Sbjct 3254252 AGGTGTTTGAACACGAGGCAGGCAAAATCACATTGCAAACCCTCATCTCTGCTAATAAGT 3254311 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 || || ||||||| || || ||||| || |||||||| || | ||| || || | ||| Sbjct 3254312 TCATTGGAAAATGAGAGGCCAGGCATTAGTCCTCGTTTCTTGAGCCAGAAAATGGATGCA 3254371 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATA 13311 || ||||| | | || |||||||| |||| ||||| |||| |||| | | ||||| Sbjct 3254372 AATGAACC---AGAGAAGATTCCTTCCACTGTCGCAAAGGCTA-CAACTCGCACTCCATA 3254427 Query 13312 CGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTT 13371 ||| | ||| | | ||||| |||||| | ||| || || || || Sbjct 3254428 GGTAACTTCTTTGTTTCCAATCCAACGCAAGGCCCAATCTGCCTTCACCTTCACACAAGG 3254487 Query 13372 CATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATC 13431 ||| ||| | || || || | ||| | ||||||| ||| ||||||||| || Sbjct 3254488 CATTGTTTAAGTGGCATTGAAGAGATATTCCCTTTCCTTGGAATCTTTAATATAAGTGTC 3254547 Query 13432 TATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAA 13491 || | | |||||||||| ||||| || |||||||| | |||||||| ||| | || Sbjct 3254548 AATGAGGAGATTATACATTTCAGAATGGATGTTTTCCATAGTAATTTGGAAGCCACAGAA 3254607 Query 13492 ACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAAC 13551 ||| || || || | ||||| || | | ||| || || || Sbjct 3254608 ACA----------GA------AATTTATAGGCTAAATCGCTCCACCAGGTTCTCATTCAC 3254651 Query 13552 TATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC 13611 ||| | ||||| || ||||| |||| | | |||| | || || | | | || || Sbjct 3254652 TATGCTATCACTGGCTGCAAAGAAAGAACG--TGTGAT--ATGAAATATCTCTC---CTC 3254704 Query 13612 TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 | | | ||| | ||| ||| || || | ||| |||||||| | |||||||| Sbjct 3254705 AGGC-----TTCCCAGTGCTGAATATCGTTAGACAGATCCACCTCCTCGGCCGTCCAAAA 3254759 Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATATATC 13707 ||||| |||| |||||||||||| ||| || || Sbjct 3254760 GGAAGCCTCAGCTTTCTTATACATCTGCCAAATGTC 3254795 >seq3 Length=92262745 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || ||||||| ||| |||| || | Sbjct 36784331 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTCAGTCCCGGCAGAAGACCTCTCTTCT 36784272 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || || ||||| || || ||||| | Sbjct 36784271 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAAG 36784212 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 36784211 CCACCACCCTTTCCCC 36784196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 || || ||| ||||| |||||||||||| |||||||| ||||| || ||||| |||||| Sbjct 36798891 TGGTACTCGGAAACTCGTTTTTCAAAAAAATTTGTTTTCCCTTCCAAAGAAATGTTTTCC 36798832 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 36798831 ATAAAATCAAAGGGATTTT 36798813 >seq1 Length=111700974 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 13404 tttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463 ||||||| ||| ||| ||||| || |||| | ||||||||||| ||||| || | Sbjct 4137888 TTTCCTTGGAATCTTTAATGTAAGTGTCAATCAGGAGACTATACATTTCAGAATGTATGT 4137829 Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||||||| || |||||||| ||||| ||||| | ||||||| | ||||||||| Sbjct 4137828 TTTCCATAGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTC 4137774 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/126 (76%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || ||||| || || || ||||| || ||||| || || Sbjct 4139651 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATTAGTCCTCGCTTCTTG 4139592 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| || || | ||||| ||||| || || || || ||||| ||||||||||| ||| Sbjct 4139591 AGCCAGAAGATGGAGGCAAATGAACCGGAGAAGAAGATGCCTTCCACTGCTGCAAAGGCT 4139532 Query 13295 ATCAAC 13300 | |||| Sbjct 4139531 A-CAAC 4139527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430938267671604