Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq25 179 4e-40 seq92 152 5e-32 seq3 100 3e-16 >seq25 Length=39250790 Score = 179 bits (198), Expect = 4e-40 Identities = 484/741 (65%), Gaps = 18/741 (2%) Strand=Plus/Minus Query 21171 ACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTT 21230 |||| | ||||||| | ||||| || | ||||| || || | || | ||||| |||| Sbjct 34005959 ACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGCTCGTCTTCCCTT 34005900 Query 21231 CCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAAC 21290 ||| || || |||||||| ||||||| ||||| ||| || || || ||| ||| Sbjct 34005899 CCAGGGAAATGTTCTCCATAAAGTCAAATGAGTTTTCTACTTTGAACATCTTGTTAAAAC 34005840 Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350 ||||||| | || || | ||| || ||||| | | || ||| || |||| Sbjct 34005839 CCAGTTCCAGCATTAGCCTGTTTGCCACGAATTCAACGTGCTGTGTCATCAAAGTGCAAT 34005780 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTT----TTCTATAGAG 21406 |||| | ||||| || || | ||| || | | | || || |||||| | Sbjct 34005779 TCATTTCAATCAACTTCACGGCAAGGCCT-----CCATATGGAATTCCTGTTCTATCCTG 34005725 Query 21407 ACGGCTTCAACAATTATATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTT 21464 || || | || || || || || | || || || ||| | || | |||| Sbjct 34005724 ACAGCATTCACTATGAT--TTCTTGTACTCTCTGCTCTGAAGGTTTGTGCAGCAGGTGTT 34005667 Query 21465 TAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAG 21524 | ||||| | || ||||| |||| |||||||| ||||| || || || | ||| || | Sbjct 34005666 TGAACATGAGGCAGGCAAAGTCACCGTGCAAACCCTCATCTCTGCTAATAAGTTCCTTGG 34005607 Query 21525 AAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC 21584 |||| || | || ||||||| ||||| || || | ||| || || || ||||| | | Sbjct 34005606 AAAACGTGAGGCCTGGCATTAGTCCTCGTTTCTTGAGCCAGAAGATGGATGCAAACGAAC 34005547 Query 21585 CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT 21644 | || ||||| ||||| || || || ||||| || || | ||| || ||||| |||| || Sbjct 34005546 CGGAGAAGAAGATGCCTTCCACTGCTGCAAAGGCTACAACTCGCTCTCCGTAGGTAGCTT 34005487 Query 21645 CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTAT 21704 |||| || ||||| ||||| | |||||| | || | |||| ||||| | Sbjct 34005486 CTTTGTCGCCAATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCT 34005427 Query 21705 CAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNN 21764 |||| | || || |||| | |||| | | | | ||| Sbjct 34005426 CAATGACATTGAAGAGATACTCCCTTTCCTTGGAACCTTTAATGTGTCAATCAGGAG--- 34005370 Query 21765 NACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTG 21824 ||||||||||||||||||||| ||||| || || || || || || || ||||| | | Sbjct 34005369 -ACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAACGGG 34005311 Query 21825 CCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCAT 21884 |||||| | ||||| || |||||| | ||| ||| |||| |||| | ||| Sbjct 34005310 CCTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAGGTTCTCATGCACTA-TGCAT 34005252 Query 21885 CACTGGCGGCAAAAAATGCCA 21905 |||||| ||||| || |||| Sbjct 34005251 CACTGGTTGCAAAGAAAGCCA 34005231 >seq92 Length=6660306 Score = 152 bits (168), Expect = 5e-32 Identities = 400/606 (66%), Gaps = 16/606 (3%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || || |||||||| | || ||| ||| || ||||||| | |||| Sbjct 3253919 TTCATTTAGAAGTCGGCATCTAAGGTAAAGGAATTCTCTGTTTGGCTTGACATCACTCCC 3253978 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || || | || || | ||||| || || || || || ||||| ||||||| || || Sbjct 3253979 ATCTTCTAGTACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGAAATG 3254038 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||| ||||| ||| || || || || |||||| ||| | Sbjct 3254039 TTCTCCATAAAGTCAAATGGGTTTTCTACTTTGAACATCTTGTTGAAACCCAATTCCAGT 3254098 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 || || ||||| || ||||| || || | |||||| |||||||| || ||| Sbjct 3254099 GTTAGCCTGTCTGCCACGAATTCAATGTACTATGTCATTAAAGTGCAATTCATTCCAATC 3254158 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | || || | || || | |||| || | |||| | ||| || | | Sbjct 3254159 AGCTTCACGTGCAGGGCCTCCGTCAGGAATTCCTGTTCTCTCCTGACAGCAT------TC 3254212 Query 21422 AT-ATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTTAAACATCAAACAT 21478 || |||| || | || || | |||| |||| | ||||| |||| | || Sbjct 3254213 ATGATTTCTTGTACTCTCTGCTCCGAAGGGTTGTACAGCAGGTGTTTGAACACGAGGCAG 3254272 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||||| |||||||| ||||| || || || | |||||| ||||||| | || Sbjct 3254273 GCAAAATCACATTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGAGAGGCCA 3254332 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||||| ||||| || || | ||| || || || ||||||| || | |||| || Sbjct 3254333 GGCATTAGTCCTCGTTTCTTGAGCCAGAAAATGGATGCAAATGAACC---AGAGAAGATT 3254389 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTT--TATCCAATA 21656 || || || | ||||| || || | ||| | || || ||| ||||| | |||| | Sbjct 3254390 CCTTCCACTGTCGCAAAGGCTACAACTCGCACTCCATAGGTAACTTCTTTGTTTCCA--A 3254447 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 |||| ||||| | |||||| | || | |||| ||||| | | | || || | Sbjct 3254448 TCCAACGCAAGGCCCAATCTGCCTTCACCTTCACACAAGGCATTGTTTAAGTGGCATTGA 3254507 Query 21717 AAAGAT 21722 | |||| Sbjct 3254508 AGAGAT 3254513 >seq3 Length=92262745 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 21128 TAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTT 21187 |||||||| ||||| || | ||| ||||||||| ||| || ||||| | | | Sbjct 36798951 TAAAAATCTGCATCCAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAACGC 36798892 Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 || || || ||||| |||||| ||||||||||| || |||||||| || || |||| Sbjct 36798891 TGGTACTCGGAAACTCGTTTTTCAAAAAAATTTGTTTTCCCTTCCAAAGAAATGTTTTCC 36798832 Query 21248 ATAAAATCAAATGGATTTTC 21267 ||||||||||| |||||||| Sbjct 36798831 ATAAAATCAAAGGGATTTTC 36798812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531844937118480