Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq8 102 7e-17 seq26 93.3 3e-14 >seq5 Length=88520344 Score = 107 bits (118), Expect = 2e-18 Identities = 156/217 (72%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGT-ATGTTGTAGTCGGCCATGGTTTTGGCGT 16781 ||| |||| ||||| |||||||| || ||| ||||||||||| | | || | | | Sbjct 1010645 CAGCACCAAGTGCAGGGTGGACTCTTTCTGTGATGTTGTAGTCCGAGAGAGTGCAGCCAT 1010704 Query 16782 CCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT 16841 |||||| ||||| || ||| |||| || |||| |||||| || | |||||| |||| Sbjct 1010705 CCTCCAGCTGTTTACCAGCAAAAATCAGATGCTGCTGGTCCGGGGGAATGCCCTCCTTGT 1010764 Query 16842 C--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 | || || ||| || || | | | ||||||| ||||||| || | |||||| Sbjct 1010765 CTTGGATTTTAGCT--TTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCAAGGGTGAT 1010822 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||| || || ||||| || || ||||| ||||||||| Sbjct 1010823 GGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATT 1010859 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| |||| ||| || || ||||||||||| | Sbjct 40362607 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAG 40362666 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| ||||| || ||| |||| || ||||| |||||| || Sbjct 40362667 AGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGA 40362726 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || || | | | |||||| | |||||| Sbjct 40362727 ATGCCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTCGATGGTGTCG-CTGGCTCCA 40362783 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || ||||| || || ||||| || ||||| || Sbjct 40362784 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATGTGCATGTT 40362835 >seq8 Length=79101790 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| |||||||| || || ||||||||||| Sbjct 4905330 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAG 4905389 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| ||||| || ||| |||| || ||||| |||||| || Sbjct 4905390 AGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGA 4905449 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || || | | | ||||||| |||||| Sbjct 4905450 ATGCCCTCCTTGTCTTGGATTTTAGCT--TTGACATTCTCAATGGTGTCGCTGGGCTCAA 4905507 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || | ||||| || || ||||| |||||||| || Sbjct 4905508 CCTCAAGGGTGATGGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCATGTT 4905559 >seq26 Length=39178583 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||| | || || ||||||||||| | || | | | || Sbjct 13898603 CAGCACCAAGTGCAG-GTGGACCCTTTCTGGATGTTGTAGTCCAAGAGAGTGTGGCCATC 13898545 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||||| ||||| || ||| |||| || |||| |||||| || | |||||| ||||| Sbjct 13898544 CTCCAACTGTTTACCAGCAAAAATCAGAGGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 13898485 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| ||||| | | ||||||| |||||| | || | ||||||| Sbjct 13898484 TTGGATTTTAGCT--TTCACATTCTCAGTGGTGTCGCTGGGCTCAGCCTCAAGGGTGATG 13898427 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || ||||| | || || || |||||||| || Sbjct 13898426 GTCTTGCCTGTCAGGGGCTTCAC-AAGATCTGCATCTT 13898390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405046519241980