Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq19 127 1e-24 seq55 118 7e-22 seq78 109 4e-19 seq39 104 2e-17 seq8 102 5e-17 seq37 95.1 8e-15 seq12 95.1 8e-15 seq10 93.3 3e-14 seq6 93.3 3e-14 >seq19 Length=49175038 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 7641413 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 7641354 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 7641353 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 7641319 >seq55 Length=14029665 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 2455974 AAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 2455915 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| |||||||||||||||||||||||||||| Sbjct 2455914 TCGTCCATTCATGCGCGTCACTAATTAGATGACGA 2455880 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 12954757 AAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 12954816 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| |||||||||||||||||||||||||||| Sbjct 12954817 TCGTCCATTCATGCGCGTCACTAATTAGATGACGA 12954851 >seq78 Length=8869305 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| |||| || |||||||| ||||| || |||||||| Sbjct 4348124 AAGCCCGTTCCCTTGGCTGTGTTTTCCCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 4348065 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| |||||||||||||||||||| Sbjct 4348064 TCATCCATTCATGGACGTCACTAATTAGATGACGA 4348030 >seq39 Length=19053451 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 ||||| ||||||||||||||| | || |||||||| | ||| || ||||||||| | Sbjct 6467143 CCCGTGCCCTTGGCTGTGGTTCCACTGGATAGTAGGTGGGGACAGTGGGAATCTCGTTCA 6467202 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||||||||||||||||||||||| Sbjct 6467203 TCCATTCATGCGCGTCACTAATTAGATGACGA 6467234 >seq8 Length=79101790 Score = 102 bits (112), Expect = 5e-17 Identities = 80/95 (84%), Gaps = 7/95 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||| |||||||||||||||||||| |||||||| ||| | || |||||||| Sbjct 22713821 AAGCCCGTGCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGAGACAGTGGGAATCTCGT 22713762 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| |||||||||||||||||| || Sbjct 22713761 TCATCCATTCAT--GCGTCACTAATTAGATGATGA 22713729 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||||| |||||| || || ||| ||| || || || ||||| || Sbjct 4905328 TACCACCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCA 4905387 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | ||||| || ||||| || || || || || || | || Sbjct 4905388 AGAGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGG 4905447 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || ||||| ||||| || ||||||| | || || | |||| Sbjct 4905448 GAATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAA 4905507 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || | || || || || |||||| ||| ||||| || |||||||||||| Sbjct 4905508 CCTCAAGGGTGATGGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCATGTTT 4905560 >seq37 Length=21497228 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| || |||||||| ||||| || |||||| | Sbjct 19127879 AAGCCCATTCCCTTGGCTGTGGTTTTGCCGGATAGTAGGTAGGGACAGTGGGAATCTCAT 19127938 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | || ||||||||||||||| ||||||||| || Sbjct 19127939 TCACCCATTCATGCGCGTCACTGATTAGATGATGA 19127973 >seq12 Length=64696486 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| | ||||||||||||||||| | ||||||| ||| | || |||||||| Sbjct 53194594 AAGCCCATGCCCTTGGCTGTGGTTTCCCGGGATAGTAAGTAGAGACAATGGGAATCTCGT 53194535 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||||||||||||||||||| Sbjct 53194534 TCATCCATTCATGCGTGTCACTAATTAGATGACGA 53194500 >seq10 Length=65549256 Score = 93.3 bits (102), Expect = 3e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||| Sbjct 27588342 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCTTTACGGTACTTGTTGGCTATCGGTCTCG 27588284 >seq6 Length=85730050 Score = 93.3 bits (102), Expect = 3e-14 Identities = 76/91 (84%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||| ||||||||||||||| |||| || ||||| ||||| || |||| |||| Sbjct 73753714 GCCCGT-CCCTTGGCTGTGGTTCCGCTGGAGAGTAGGTAGGGACAGTGGGAATCGCGTTC 73753656 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||| |||||||||||| ||||||||||||| Sbjct 73753655 ATCCATTCATGCGCGTCCCTAATTAGATGAC 73753625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334912901616062