Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq51 219 5e-52 seq25 217 2e-51 seq1 91.5 2e-13 seq120 86.0 7e-12 >seq51 Length=16359109 Score = 219 bits (242), Expect = 5e-52 Identities = 527/787 (67%), Gaps = 14/787 (2%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || || ||||| |||| ||| | ||||||| ||||||||||| | || Sbjct 9671753 CTGTCTGCCACGAATTCAATGTGCTGTGTCATCAAAGTGCAATTCATTCCAATCAGTTTC 9671812 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA-GATTTC 93042 | || | || || || | ||| || | || | | || || | | ||| |||||| Sbjct 9671813 AAGGGCAAGGCTTCCGTAAGGAATTCCTGTTCTACTCTGACAGCAT-TCACAATGATTTC 9671871 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 | |||||| | || ||||| || | | | ||| ||| | ||| |||||||| Sbjct 9671872 TTGTACTCTCTGCTCTGAAGGTTTGTGCAGCAGGTGTTTGAACACGAGGCAGGCAAAGTC 9671931 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACA 93161 || ||||| || |||| || | |||| ||||| || || | ||||| | | Sbjct 9671932 ACAGTGCAAACCCTCATCTC-TGCGAATAACTTCATTGGAAAACGTGAGGCCTGGCATTA 9671990 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 |||||| |||||||||||| || || || ||||| ||| || || || || ||||||| Sbjct 9671991 GTCCTCCTTTCTTGAGCCAGAAGATGGAGGCAAACGAACCGGAGAAGAAGATGCCTTCCA 9672050 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAA---ATTTGCGGAATTACTGCTGATCCATT 93278 | |||||||| || |||| | || || | | || | || || ||||| Sbjct 9672051 CTGCTGCAAAGGCTACAACTCTCTCTCCATAGGTACTTTCT---TTGTCGCCAATCCAAC 9672107 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 || |||||||| || || ||||| | |||||| | ||| || | || | || || | Sbjct 9672108 GCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCCGTGGCACTGAAGAGAT 9672167 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | || | || | || ||| ||||| || || || | ||| |||||||||||||| Sbjct 9672168 ACTCCCTTTCTTTGGACTCTTTAATGTAAGTGTCAATCAGGAGACTATACATTTCAGAAT 9672227 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | | || ||||||||||||||||| || ||||| | | || || || ||||| | | Sbjct 9672228 GTATGTTATCCATTGCAATTTGGAAACCATAGAACTAGCGGGCCTCTGTAATCTGAATGT 9672287 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 |||| ||||| ||| || || ||||||| || || || || |||||||| |||| Sbjct 9672288 CTTGGCTAAATCGCTCCACCAGGTTTTCATGCACGATGCCGTCACTGGCTGCAAAGAAAG 9672347 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGA 93577 ||| || ||| |||| | |||| ||| | || ||||| | | || | Sbjct 9672348 CCAGAGCGTGGGATATGAAATCTCTCTCCTCAGGCTGCAGGGCTTCCCAGTGCTGA-ATG 9672406 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATA 93637 ||||| |||||||| || | ||| | |||||||| || || || ||||| || ||||| Sbjct 9672407 TCTTTAGAAAGATCCAC--CCTCGGCCGTCCAAAAGGAGGCCTCAGCTTTCTTATACATC 9672464 Query 93638 TCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGT 93697 | ||| ||| | || || | || ||||| | |||||| || ||||| || || || Sbjct 9672465 TGCCAAATGCCATGGTACTCGATGGGAAAGAAGACAAAGCGGCGGGGGTTCTCCTTCAGC 9672524 Query 93698 AACGGCT 93704 || |||| Sbjct 9672525 AAGGGCT 9672531 >seq25 Length=39250790 Score = 217 bits (240), Expect = 2e-51 Identities = 438/641 (68%), Gaps = 9/641 (1%) Strand=Plus/Minus Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||||||| |||||| | || ||||| || | | | ||| |||| | ||| || Sbjct 34005710 GATTTCTTGTACTCTCTGCTCTGAAGGTTTGTGCAGCAGGTGTTTGAACATGAGGCAGGC 34005651 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTG 93155 |||||| || ||||| || |||| || || || | | ||| || || | |||| Sbjct 34005650 AAAGTCACCGTGCAAACCCTCATCTC-TGCTAATAAGTTCCTTGGAAAACGTGAGGCCTG 34005592 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | |||||||||||||||||||| || || || ||||| ||| || || || || | Sbjct 34005591 GCATTAGTCCTCGTTTCTTGAGCCAGAAGATGGATGCAAACGAACCGGAGAAGAAGATGC 34005532 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 ||||||| |||||||| || |||| || || | | | || || || |||| Sbjct 34005531 CTTCCACTGCTGCAAAGGCTACAACTCGCTCTCCGTAGGTAGCTTCTTTGTCGCCAATCC 34005472 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || |||||||| || || ||||| | |||||| | ||| || || | || || | Sbjct 34005471 AACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCAATGACATTGAAGA 34005412 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | || || | || | ||| || || |||| || || | ||| ||||||||||| Sbjct 34005411 GATACTCCCTTTCCTTGGAACCTT-TA---ATGTGTCAATCAGGAGACTATACATTTCAG 34005356 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 |||| | || ||||| ||||||||||| || |||||||| | || || || ||||| | Sbjct 34005355 AATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAACGGGCCTCTGTAATCTGAA 34005296 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 ||||||| ||||| ||| || || || |||| ||||| |||| | |||||| | Sbjct 34005295 CTTCTTGGCTAAATCGCTCCACCAGGTTCTCATGCACTAT-GCATCACTGGTTGCAAAGA 34005237 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGAT 93574 |||||| || ||| |||| | |||| ||| || || ||||| | | || Sbjct 34005236 AAGCCAGAGCGTGGGATATGAAATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAG 34005177 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | |||| |||||||| | || ||| | |||||||| || || || ||||| || ||| Sbjct 34005176 TG-GCTTTAGAAAGATCCAGCTCCTCGGCCGTCCAAAAGGAGGCCTCAGCTTTCTTATAC 34005118 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || | ||| ||||| || || | || ||||| | ||||| Sbjct 34005117 ATCTGCCAAATGTCATGGTACTCGATGGGAAAGACAACAAA 34005077 >seq1 Length=111700974 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||| | || ||||| Sbjct 4137880 GAATCTTTAATGTAAGTGTCAATCAGGAGACTATACATTTCAGAATGTATGTTTTCCATA 4137821 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||||| | || || || ||||| |||||||| ||||| | Sbjct 4137820 GCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAATCTGAACTTCTTGGCTAAATCGC 4137761 Query 93473 TCTAC 93477 || || Sbjct 4137760 TCCAC 4137756 >seq120 Length=3276030 Score = 86.0 bits (94), Expect = 7e-12 Identities = 169/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 ||||| | || | |||||| || || ||||| | |||||| | | | | || || | Sbjct 2355897 ATCCAATGCAAGGTCCAATCTGCCTTCTTCTTCACACAAGGCATTTTCTTAATGGCACTG 2355838 Query 93332 AATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 || || || || | || | |||| | || || | ||| || | ||| ||||||| Sbjct 2355837 AAGAGATATTCCCTTTCTTTGGAATTTTTAATCTAAGCATCAATAAGTAGACCATACATT 2355778 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 || || || | || ||||| ||||||||||| || | |||| | | |||| ||| Sbjct 2355777 TCTGACTGTATGTTTTCCATAGCAATTTGGAAGCCATCGAAATAGGGGCCCGCCGTAATC 2355718 Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 || ||||| ||| ||||| ||| || | |||| | | ||||| ||||| |||| || Sbjct 2355717 TGGACTTCATGACTAAATCACTCCACCAAGTTTTAACTCACTATTCCATCACCTGCTACA 2355658 Query 93512 aaaaaaGCCA 93521 || ||| || Sbjct 2355657 AAGGAAGTCA 2355648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556802315694480