Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq8 114 1e-20 seq5 102 7e-17 seq25 86.0 5e-12 >seq8 Length=79101790 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || || || | || || ||||| || |||||||| || Sbjct 4905327 ATACCACCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCC 4905386 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || || ||||||||||| | || |||||||| |||||||| Sbjct 4905387 AAGAGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGG 4905446 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| || || ||| | | |||| ||||||| ||| || Sbjct 4905447 GGAATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCA 4905506 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||| | ||||| || || ||||| ||||||||| Sbjct 4905507 ACCTCAAGGGTGATGGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCATG 4905557 >seq5 Length=88520344 Score = 102 bits (112), Expect = 7e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || || || | || | ||||| || |||||||| || Sbjct 40362604 ATACCACCACGCAGACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCC 40362663 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || || ||||||||||| | || |||||||| |||||||| Sbjct 40362664 GAGAGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGG 40362723 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| || || ||| | | || | ||||||| ||| || Sbjct 40362724 GGAATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGG-CTCC 40362782 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| ||||| || || ||||| || |||||| Sbjct 40362783 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATGTGCATG 40362833 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGA-ATGTTGTAATC 114211 ||||| ||| | || | || || || || | || || ||||| || |||||||| || Sbjct 1010628 ATACCACCATGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGTGATGTTGTAGTC 1010687 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | ||| | ||| || || ||||||||||| | || ||| |||| |||||||| Sbjct 1010688 CGAGAGAGTGCAGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGATGCTGCTGGTCCGG 1010747 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||||| || ||||| || || ||| | | || | ||||||| ||| || Sbjct 1010748 GGGAATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTC 1010807 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 1010808 CACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1010858 >seq25 Length=39250790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| || |||||||| || | |||| | |||||| || || || ||| Sbjct 16908927 GTAGATTCTTTCTGGATGTTGTAGTCAGACTTAGTGCAGCCATCTTCCAGCTGCTTCCCA 16908868 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||| ||||||| || || | | || || Sbjct 16908867 GCAAAGATCAGCCTCTGGTGGTCAGGAGGGTTGCCTTCCTTATCTTGGA-CCTTGCCTTG 16908809 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | || |||| |||||| ||| ||||| || | || | || || || || | |||| Sbjct 16908808 ACCTTCTCAATGGTGTCCCTGGGCTCGACCTCAAGGGCGATGGTCTTACCAGTTACAGTT 16908749 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 16908748 TTCACAAAGATCTGCAT 16908732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420091378500024