Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq51 158 2e-33 seq25 150 3e-31 seq1 102 2e-16 seq92 100 5e-16 >seq51 Length=16359109 Score = 158 bits (174), Expect = 2e-33 Identities = 481/732 (66%), Gaps = 21/732 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||| ||||| || ||| ||||||||| || |||| ||||||| | || | Sbjct 9672351 CTGGCTTTCTTTGCAGCCAGTGACGGCATCGTGCATGAAAACCTGGTGGAGCGATTTAGC 9672292 Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||| | ||| ||| ||||| |||| ||||| || ||||| || || || || | Sbjct 9672291 CAAGACATTCAGATTACA--GAGGCCCGCTAGTTCTATGGTTTCCAAATTGCAATGGATA 9672234 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600 || | || ||||| |||| ||| | |||| ||||| || ||| | Sbjct 9672233 ACATACATTCTGAAATGTATAGTCTCCTGATTGACACTTACATTAAAGA----GTCCAAA 9672178 Query 42601 GTAACGGG----CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 | || || || |||| |||| |||||| ||||| || | ||||||||||| || Sbjct 9672177 GAAAGGGAGTATCTCTTCAGTGCCACGGAGACAATGCCTTGTGTGAAGAAGAAGGCAGAT 9672118 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCC-GACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||| | ||||| | | | | || || | || ||||| | |||||||| Sbjct 9672117 TGGGCCTTGCGTTGGATTG-GCGACAAAGAAAGTACCTATGGAGAGAGAGTTGTAGCCTT 9672059 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-C 42774 | | || || || |||||||||||||| || | || ||||||||||||||||||||| Sbjct 9672058 TGCAGCAGTGGAAGGCATCTTCTTCTCCGGTTCGTTTGCCTCCATCTTCTGGCTCAAGAA 9671999 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 || ||| | ||||| || ||||| || || || ||| | || |||| || ||||| Sbjct 9671998 AGGAGGACT-AATGCCAGGCCTCACGTTTTCCAATGAAGTTATTCGCAGAGATGAGGGTT 9671940 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 |||| | ||||||||||||||| ||||| | ||||| |||||| || || || Sbjct 9671939 TGCACTGTGACTTTGCCTGCCTCGTGTTC---AAACACCTGCTGCACAAACCTTCAGAGC 9671883 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGT-GGAGATCGAGAAGGAGTTCCTCACGCAG 42953 || | || | | ||||| | | || || ||| | || |||| ||||| ||| | Sbjct 9671882 AGAGAGTACAAGAAATCATTGTGAATGCTGTCAGAG-TAGAACAGGAATTCCTTACGGAA 9671824 Query 42954 TCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 | ||||| || ||| | || ||||| | | ||| || |||| | | | Sbjct 9671823 GCCTTGCCCTTGAAACTGATTGGAATGAATTGCACTTTGATGACACAGCACATTGAATTC 9671764 Query 43014 GTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073 || || ||| || || | ||||| | | | || | ||| ||| Sbjct 9671763 GTGGCAGACAGGCTAATGCTGGAACTGGGTTTTAACAAGCTGTTCAAAGTAGAAAACCCA 9671704 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 || ||||||||||||||||| || |||| || ||||| ||||| || |||||| | || Sbjct 9671703 TTTGACTTTATGGAGAACATGTCCCTGGAAGGGAAGACGAACTTCTTTGAGAAGAGAGTA 9671644 Query 43134 GCCGACTACCAG 43145 | ||| || ||| Sbjct 9671643 GGCGAGTATCAG 9671632 >seq25 Length=39250790 Score = 150 bits (166), Expect = 3e-31 Identities = 395/590 (67%), Gaps = 27/590 (5%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| ||||| ||| ||||| ||||| || || |||| ||||| ||| Sbjct 34005092 ATCGAGTACCATGACATTTGGCAGATGTATAAGAAAGCTGAGGCCTCCTTTTGGACGGCC 34005151 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGT---CTGAGAACGAA 42401 |||||| | || || | || | ||| |||||| | ||| ||||| | | Sbjct 34005152 GAGGAGCTGGATCTTTCTAAAGCCACTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAGA 34005211 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 | |||| | || ||||| ||||| || || ||| | |||||| ||||| Sbjct 34005212 GA---TTTCATATCCCACGCTCTGGCTTTCTTTGCAACCAGTGATG-CATAGTGCATGAG 34005267 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACG 42519 ||||||| | || | |||| || ||| ||| ||||| || || ||||| | Sbjct 34005268 AACCTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACA--GAGGCCCGTTGTTTCTATG 34005325 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 ||||||| || || || || ||| | || ||||| |||| ||| | |||| | Sbjct 34005326 GCTTCCAAATTGCTATGGAAAACATACATTCTGAAATGTATAGTCTCCTGATTGACACAT 34005385 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGG----CTGTTCAAGGCCATGGAGACGATGCCC 42635 | || ||| || | || || || ||||| | ||| ||||| ||||| Sbjct 34005386 TAAA---GGTTCCA----AG-GAAAGGGAGTATCTCTTCAATGTCATTGAGACAATGCCT 34005437 Query 42636 TGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCC-GACGCAACGTT 42694 || | ||||||||||| || ||||| | ||||| | | | | || || || | Sbjct 34005438 TGTGTGAAGAAGAAGGCAGATTGGGCCTTGCGTTGGATTG-GCGACAAAGAAGCTACCTA 34005496 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 ||| ||| | | ||||||||| | || || || |||||||||||||| || | || || Sbjct 34005497 CGGAGAGCGAGTTGTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCCGGTTCGTTTGC 34005556 Query 42755 CTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 |||||||||||||||||| | ||| | ||||| || ||||| || || || |||| Sbjct 34005557 ATCCATCTTCTGGCTCAAGAAACGAGGACT-AATGCCAGGCCTCACGTTTTCCAAGGAAC 34005615 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 | || ||||| || ||||| |||| | ||||||||||||||| ||||| Sbjct 34005616 TTATTAGCAGAGATGAGGGTTTGCACGGTGACTTTGCCTGCCTCATGTTC 34005665 >seq1 Length=111700974 Score = 102 bits (112), Expect = 2e-16 Identities = 99/125 (79%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || |||||||||||||| || | || ||||||||||||||| Sbjct 4139530 GTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCCGGTTCATTTGCCTCCATCTTCTGG 4139589 Query 42768 CTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| || ||| | ||||| || ||||| || || || ||||| |||||||| || Sbjct 4139590 CTCAAGAAGCGAGGACT-AATGCCTGGCCTCACGTTTTCCAATGAACTTATCAGCAGAGA 4139648 Query 42827 CGAGG 42831 |||| Sbjct 4139649 TGAGG 4139653 >seq92 Length=6660306 Score = 100 bits (110), Expect = 5e-16 Identities = 293/442 (66%), Gaps = 17/442 (4%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | | || || || ||||||| | || | || || ||||| |||||| Sbjct 3254412 GTAGCCTTTGCGACAGTGGAAGGAATCTTCT---CTGGTTCATTTGCATCCATTTTCTGG 3254356 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | ||||| || ||| | || || || ||||| || ||||| || Sbjct 3254355 CTCAAGAAACGAGGACTA-ATGCCTGGCCTCTCATTTTCCAATGAACTTATTAGCAGAGA 3254297 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 ||||| |||| | || |||||||||||| ||||| | ||||| | |||| || Sbjct 3254296 TGAGGGTTTGCAATGTGATTTTGCCTGCCTCGTGTTC---AAACACCTGCTGTACAACCC 3254240 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGT--GGAGATCGAGAAGGAGTTC 42944 ||| || || | || | | ||||| | | || || ||||| || |||| ||| Sbjct 3254239 TTCGGAGCAGAGAGTACAAGAAATCAT---GAATGCTGTCAGGAGA--GAACAGGAATTC 3254185 Query 42945 CTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTAC 43004 || ||| || | |||| |||| ||| | || ||||| | | ||| ||||| Sbjct 3254184 CTGACGGAGGCCCTGCACGTGAAGCTGATTGGAATGAATTGCACTTTAATGACATAGTAC 3254125 Query 43005 ATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACAC 43063 || | | ||| || ||| || | || | ||||| ||| | | | ||| Sbjct 3254124 ATTGAATTCGTGGCAGACAGGCTAACACTG-GAATTGGGTTTCAACAAGATGTTCAAAGT 3254066 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 ||| || ||||||||||||||||| || |||| || ||||| ||||| || || Sbjct 3254065 AGAAAACCCATTTGACTTTATGGAGAACATTTCCCTGGAAGGGAAGACGAACTTCTTTGA 3254006 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 |||| | || | ||| ||| || Sbjct 3254005 GAAGAGAGTAGGCGAGTACTAG 3253984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944240020775520