Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8 104 6e-17 seq5 104 6e-17 seq9 96.9 8e-15 seq116 89.7 1e-12 seq37 86.0 1e-11 seq1 86.0 1e-11 >seq8 Length=79101790 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| ||| ||||| || || || | ||||| || || || Sbjct 4905366 TCTTTCTGGATGTTGTAGTCCAAGAGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAA 4905425 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || || ||| || || || || || |||||||| ||||| || Sbjct 4905426 ATCAGACGCTGCTG---GTCCGGGGGAATGCCCTCCTTGTCTTGGATTTTAGCTTTGACA 4905482 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | || || || || ||||| ||||| | ||||| ||||| Sbjct 4905483 TTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGGCCGTCAGGGTCTTC 4905542 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 4905543 ACAAAGATCTGCAT 4905556 >seq5 Length=88520344 Score = 104 bits (114), Expect = 6e-17 Identities = 141/194 (73%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| ||||| || || || | ||||| || || || Sbjct 40362643 TCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAA 40362702 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || || ||| || || || || || |||||||| ||||| || Sbjct 40362703 ATCAGACGCTGCTG---GTCCGGGGGAATGCCCTCCTTGTCTTGGATTTTGGCTTTGACA 40362759 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| | || || || || ||||| ||||| || ||||| ||||| Sbjct 40362760 TTCTCGATGGTGTCGCT-GGCTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 40362818 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 40362819 ACAAAGATGTGCAT 40362832 >seq9 Length=72894145 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 ||||| || || || | || ||||| || ||||| | || || || || ||||| || Sbjct 50766060 TGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGC 50766001 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 | ||| || | ||||| || || ||||||||||| || || ||||| || || || Sbjct 50766000 CTCTGCTGGTCAGG-GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATG 50765942 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | |||||| | || || || || ||||| | ||||| ||||| ||||| ||||| || Sbjct 50765941 GTATCGCTGGGCTCCACCTCCAGGGTGATGGCTTTCCCAGTCAGGGTCTTTACGAAGATT 50765882 Query 288469 TGCAT 288473 ||||| Sbjct 50765881 TGCAT 50765877 >seq116 Length=3800712 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||| | || || || ||| ||||| || ||||| | || || || || ||| Sbjct 1368253 TCTTTCTGGGTGTTGTAATCATAGAGAGTGCG-CCATCTTCCAGCTGCTTGCCCGCAAAG 1368311 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||| || || || ||||||||||| || | |||||| | Sbjct 1368312 ATGAGCCTCTGCTGGTCAGGTGG-ATGCCCTCCTTATCCTGGATCTTGCCCTTCACGCTC 1368370 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||||| | || | || || ||||| || ||||| ||||| ||||| ||| Sbjct 1368371 TCGATGGCATCGCTGGGCTCCAGCTCCAGGGTGATGGTTTTCCCAGTCAGGGTCTTTACG 1368430 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1368431 AAGATTTGCAT 1368441 >seq37 Length=21497228 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||||||||| || || |||||||| || || | |||||| | || Sbjct 17634802 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCC 17634861 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 17634862 ACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTCACGAAGATTTGCAT 17634911 >seq1 Length=111700974 Score = 86.0 bits (94), Expect = 1e-11 Identities = 133/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || || || |||| ||||| || || || | ||||| || || || ||| Sbjct 26898491 TTCTGGATGTTGTAATC--CGAGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAAAATC 26898548 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | || || || || || || |||||||| ||||| || || || Sbjct 26898549 AGACGCTGCTG-GTTGGGGGAATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCG 26898607 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | ||||| | || | || || ||||| ||||| || | ||| ||||| || || Sbjct 26898608 ATGGTGTCGCTGGGCTCCCCCTCAAGGGTGATGGTCTTGCCTGCCAGGGTCTTCACAAAG 26898667 Query 288466 ATCTGCAT 288473 || ||||| Sbjct 26898668 ATGTGCAT 26898675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179527409466556