Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5 136 4e-27 seq8 125 8e-24 seq32 98.7 1e-15 seq9 96.9 4e-15 seq225 95.1 1e-14 seq70 93.3 5e-14 seq116 91.5 2e-13 seq39 91.5 2e-13 seq26 89.7 6e-13 >seq5 Length=88520344 Score = 136 bits (150), Expect = 4e-27 Identities = 163/220 (74%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 40362618 ACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCC 40362677 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| |||||||| || || || ||||||||||| | || | || |||||| Sbjct 40362678 ATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 40362737 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| |||||| ||||| || | | |||||||| | ||||| || | ||||| Sbjct 40362738 GTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCT-GGCTCCACCTCAAGGGTGAT 40362796 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 ||| |||||||| || ||||| |||||||| ||||| ||| Sbjct 40362797 GGTCTTGCCCGTCAGGGTCTTCACAAAGATGTGCATGTTC 40362836 >seq8 Length=79101790 Score = 125 bits (138), Expect = 8e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| ||| ||| || || || ||||| || ||||| || | Sbjct 4905341 ACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAGAGAGTGCGGCC 4905400 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| |||||||| || || || ||||||||||| | || | || |||||| Sbjct 4905401 ATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 4905460 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| |||||| ||||| || | | |||||||| | || || || | ||||| Sbjct 4905461 GTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGAT 4905520 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| ||| |||| || ||||| |||||||| ||||| || Sbjct 4905521 GGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCATGTT 4905559 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 32113455 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 32113514 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 32113515 TACTAACGAGGA 32113526 >seq32 Length=28911305 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 || || |||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 25037334 ACACAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCC 25037275 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG-----GCTGGCACGCTC 42107 || || |||||||||||||| | || || |||||||||| | | || | || | Sbjct 25037274 ATCCTCCAGCTGCTTACCAGCAGAAATCAGACGCTGCTGGTGGGGGGAGGGGGGATGCCC 25037215 Query 42108 TCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACC 42167 |||||||| |||||| ||||| ||| | | |||||||| | || | || | Sbjct 25037214 TCCTTGTCTTGGATTTTGGCTTTGACAGTCTCGATGGTGTCGCT-GGCTCAGCCTCAAGG 25037156 Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||| ||| ||||| || || ||||| ||| |||| ||||| || Sbjct 25037155 GTGACGGTCTTGCCTGTCAGGGTCTTCACAGAGATCTGCATCTT 25037112 >seq9 Length=72894145 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 42024 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 42083 || || |||||||||| ||||| || | || || |||||||| || || || ||||| Sbjct 50766060 TGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGC 50766001 Query 42084 CGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC 42143 | ||||||||| | || | || |||||| ||| ||| || || | || | | Sbjct 50766000 CTCTGCTGGTCAGGGGG-ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATG 50765942 Query 42144 GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATT 42203 || ||||| | ||||| || | ||||||| ||| || || || |||||||| |||||| Sbjct 50765941 GTATCGCTGGGCTCCACCTCCAGGGTGATGGCTTTCCCAGTCAGGGTCTTTACGAAGATT 50765882 Query 42204 TGCAT 42208 ||||| Sbjct 50765881 TGCAT 50765877 >seq225 Length=154652 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 79105 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 79164 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 79165 CTATACTAACGAGGA 79179 >seq70 Length=10445819 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1950611 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1950670 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 1950671 TACTAACGAGGAATGA 1950686 >seq116 Length=3800712 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || | ||||||||| ||||| ||| | || || |||||||| || || || Sbjct 1368252 CTCTTTCTGGGTGTTGTAATCATAGAGAGTGCGC-CATCTTCCAGCTGCTTGCCCGCAAA 1368310 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||| | ||| | || |||||| ||| ||| || || | | Sbjct 1368311 GATGAGCCTCTGCTGGTCAGGTGG-ATGCCCTCCTTATCCTGGATCTTGCCCTTCACGCT 1368369 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | | ||||| | |||| || | ||||||||||| || || || |||||||| Sbjct 1368370 CTCGATGGCATCGCTGGGCTCCAGCTCCAGGGTGATGGTTTTCCCAGTCAGGGTCTTTAC 1368429 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 1368430 GAAGATTTGCAT 1368441 >seq39 Length=19053451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 14829388 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 14829447 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 14829448 TACTAACGAGGACTG 14829462 >seq26 Length=39178583 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 39136521 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 39136580 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 39136581 TACTAACGAGGA 39136592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543155749075680