Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8 109 5e-19 seq5 105 6e-18 seq1 98.7 9e-16 seq4 89.7 5e-13 seq93 82.4 7e-11 seq32 82.4 7e-11 >seq8 Length=79101790 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || |||||||| || || ||||| || Sbjct 4905330 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAG 4905389 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| ||||| | |||| |||||||| || || || Sbjct 4905390 AGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGA 4905449 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| |||||| |||| | || | |||||| | ||| || Sbjct 4905450 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 4905509 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || ||| | ||||| || || ||||| ||||||||| Sbjct 4905510 TCAAGGGTGATGGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCATG 4905557 >seq5 Length=88520344 Score = 105 bits (116), Expect = 6e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || | |||||| || || ||||| || Sbjct 40362607 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAG 40362666 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| ||||| | |||| |||||||| || || || Sbjct 40362667 AGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGA 40362726 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| |||||| |||| | |||| ||||| || ||| || Sbjct 40362727 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGT-CGCTGGCTCCACC 40362785 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || ||||| ||||| || || ||||| || |||||| Sbjct 40362786 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATGTGCATG 40362833 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGA-ATATTGTAATCGCCCATCGTGCGAGA 126957 |||| |||||| || | || |||||||| || || ||||| || | |||| Sbjct 1010643 CGCAGCACCAAGTGCAGGGTGGACTCTTTCTGTGATGTTGTAGTCCGAGAGAGTGCAGCC 1010702 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || |||||||| ||||| | |||| ||||||| || || || ||||||||||| Sbjct 1010703 ATCCTCCAGCTGTTTACCAGCAAAAATCAGATGCTGCTGGTCCGGGGGAATGCCCTCCTT 1010762 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| |||||| |||| | |||| |||||| | ||| || || | ||| | Sbjct 1010763 GTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCAAGGGTGAT 1010822 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 1010823 GGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1010858 >seq1 Length=111700974 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || ||||||| | || | |||||||| | Sbjct 26898453 CCACCACGCAGACGCAGCACCAAGTGCAGGGTCGACTCTTCTGGA-TGTTGTAATC--CG 26898509 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| ||||| | |||| |||||||| | ||| || Sbjct 26898510 AGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAAAATCAGACGCTGCTGGTTGGG-GGA 26898568 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| |||||| |||| | |||| |||||| | ||| | Sbjct 26898569 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCCCC 26898628 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| | ||| || || ||||| || ||||| Sbjct 26898629 TCAAGGGTGATGGTCTTGCCTGCCAGGGTCTTCACAAAGATGTGCAT 26898675 >seq4 Length=91125384 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || |||||||| || || ||||| || | | ||||| | Sbjct 27213452 CGCAGCACCAAGTGCAG-GTGGACTCTTTCTGGATGTTGTAGTC--CGAGAGTGCGGCCA 27213508 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| ||||| | |||| | |||||| || ||| | |||||||||||| Sbjct 27213509 TCCTCCAGCTGTTTACCAGCAAAAATCAGACACTGCTGGTCTGGAAGAATGCCCTCCTTG 27213568 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || |||||| |||| | |||| | ||| | ||| | || | ||| || Sbjct 27213569 TCTCGGATTTTAGCTTTGACATTCTCGATGCTGTTGCTGGGCTCAGCCTCAAGGGTGACG 27213628 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||| | || || ||||| | |||||| Sbjct 27213629 GTCTTGCCCGTCTGGGTCTTCACAAAGACCTGCAT 27213663 >seq93 Length=6471344 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || | ||||| || || ||||| || | ||||| | Sbjct 5958113 CGCAGCACCAAGTGCAG-GTGGGATCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCA 5958055 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || | |||||||| ||||| | ||| |||||||| || || || |||||||||||| Sbjct 5958054 TCCACCAGCTGTTTGCCAGCAAAAGTCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTG 5957995 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT-TCGACGGTCAC 127077 || |||||| ||||| || |||| |||||| ||| ||| || | ||| Sbjct 5957994 TCTTGGATTTTAACCTTGACTTTCTCGATGGTGTCACGGGGCTC-ACTCTCAAGGGTAGT 5957936 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || ||||| |||||||| Sbjct 5957935 GGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 5957900 >seq32 Length=28911305 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | | || |||||| || | || |||||||| || || ||||| || Sbjct 25037345 CCACCACGCAGACACAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 25037286 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG-- 127004 | ||||| ||| || ||||| || ||||| | |||| |||||||| | ||| | Sbjct 25037285 AGAGTGCGGCCATCCTCCAGCTGCTTACCAGCAGAAATCAGACGCTGCTGGTGGGGGGAG 25037226 Query 127005 ---GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCT 127061 | |||||||||||||| |||||| |||| |||| ||||| || || Sbjct 25037225 GGGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACAGTCTCGATGGTGT-CGCTGGCT 25037167 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | | || | ||| || || ||||| ||||| || || ||| | |||||||| Sbjct 25037166 CAGCCTCAAGGGTGACGGTCTTGCCTGTCAGGGTCTTCACAGAGATCTGCAT 25037115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475450860528480