Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 125 8e-24 seq8 118 1e-21 seq9 105 8e-18 seq116 96.9 4e-15 seq93 84.2 2e-11 >seq5 Length=88520344 Score = 125 bits (138), Expect = 8e-24 Identities = 160/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| || ||| || ||||| |||||||| || |||||||| | Sbjct 40362618 ACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCC 40362677 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| || || || || |||| ||||||||||| | || | || |||||| Sbjct 40362678 ATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 40362737 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| || |||| || | | |||||||| | ||||| || | ||||| Sbjct 40362738 GTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCT-GGCTCCACCTCAAGGGTGAT 40362796 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||| ||||||||||| || || |||||||| ||||| || Sbjct 40362797 GGTCTTGCCCGTCAGGGTCTTCACAAAGATGTGCATGTT 40362835 >seq8 Length=79101790 Score = 118 bits (130), Expect = 1e-21 Identities = 160/222 (72%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| || ||| || ||||| |||||||| | |||||||| | Sbjct 4905341 ACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAGAGAGTGCGGCC 4905400 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||| || || || || |||| ||||||||||| | || | || |||||| Sbjct 4905401 ATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 4905460 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| || |||| || | | |||||||| | || || || | ||||| Sbjct 4905461 GTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGAT 4905520 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 ||| ||| ||||||| || || |||||||| ||||| ||||| Sbjct 4905521 GGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCATGTTTGC 4905562 >seq9 Length=72894145 Score = 105 bits (116), Expect = 8e-18 Identities = 135/185 (73%), Gaps = 1/185 (1%) Strand=Plus/Minus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 ||||| ||||| || || |||||||| | || || ||||||||||| || || || | Sbjct 50766060 TGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGC 50766001 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 | ||||||||| | || | || |||||| ||| |||||| ||| | || | | Sbjct 50766000 CTCTGCTGGTCAGGGGG-ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATG 50765942 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 || ||||| | ||||| |||| ||||||| ||| || ||||| || || || |||||| Sbjct 50765941 GTATCGCTGGGCTCCACCTCCAGGGTGATGGCTTTCCCAGTCAGGGTCTTTACGAAGATT 50765882 Query 46589 TGCAT 46593 ||||| Sbjct 50765881 TGCAT 50765877 >seq116 Length=3800712 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||| | ||||| || | ||||||||| | || || ||||||||||| || || Sbjct 1368252 CTCTTTCTGGGTGTTGTAATCATAGAGAGTGCGC-CATCTTCCAGCTGCTTGCCCGCAAA 1368310 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | || |||||| ||| |||||| ||| | | Sbjct 1368311 GATGAGCCTCTGCTGGTCAGGTGG-ATGCCCTCCTTATCCTGGATCTTGCCCTTCACGCT 1368369 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | | ||||| | |||| |||| ||||||||||| || ||||| || || || Sbjct 1368370 CTCGATGGCATCGCTGGGCTCCAGCTCCAGGGTGATGGTTTTCCCAGTCAGGGTCTTTAC 1368429 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 1368430 GAAGATTTGCAT 1368441 >seq93 Length=6471344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| |||| || || || ||||| |||||||| || |||||||| | Sbjct 5958114 ACGCAGCACCAAGTGCAG-GTGGGATCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCC 5958056 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || | ||||| ||||| || || ||| ||||||||||| | || | || |||||| Sbjct 5958055 ATCCACCAGCTGTTTGCCAGCAAAAGTCAGACGCTGCTGGTCTGGGGGAATGCCCTCCTT 5957996 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||| || ||||| || | | ||||| | | || || | || | Sbjct 5957995 GTCTTGGATTTTAACCTTGACTTTCTCGATGGTGTCACGGGGCTCACTCTCAAGGGTAGT 5957936 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||| |||| || || |||||||| ||||| Sbjct 5957935 GGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 5957900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565179035837040