Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5 105 5e-18 seq8 96.9 3e-15 seq124 84.2 2e-11 >seq5 Length=88520344 Score = 105 bits (116), Expect = 5e-18 Identities = 155/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || ||| |||||| || || ||||| || || ||| | || Sbjct 40362616 AGACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGG 40362675 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| ||||| ||||| ||||| ||||| || |||| ||||| ||||||| Sbjct 40362676 CCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCC 40362735 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||| ||| | | | || | | ||||||||| | || Sbjct 40362736 TTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTC-GCTGGCTCCACCTCAAGGGTG 40362794 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||||| || || ||||| || ||||| Sbjct 40362795 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATGTGCAT 40362832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGA-ATATTGTAATCAGATAGACTTCG 48607 || |||| |||||| || || ||| |||||| || || ||||| || || ||| | | Sbjct 1010640 AGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGTGATGTTGTAGTCCGAGAGAGTGCA 1010699 Query 48608 ATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTC 48667 | || |||| ||| ||||| ||||| ||||| |||| || |||| ||||| |||||| Sbjct 1010700 GCCATCCTCCAGCTGTTTACCAGCAAAAATCAGATGCTGCTGGTCCGGGGGAATGCCCTC 1010759 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| || || ||| ||| | | | || | ||||||||| | || Sbjct 1010760 CTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCAAGGGT 1010819 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || ||||| |||||||| Sbjct 1010820 GATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1010858 >seq8 Length=79101790 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || || ||| |||||| || || ||||| || | ||| | || Sbjct 4905339 AGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAGAGAGTGCGG 4905398 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| ||||| ||||| ||||| ||||| || |||| ||||| ||||||| Sbjct 4905399 CCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCC 4905458 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||| ||| | | | || | ||| ||||| | || Sbjct 4905459 TTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTG 4905518 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||| || || ||||| |||||||| Sbjct 4905519 ATGGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCAT 4905556 >seq124 Length=2835626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||||| |||||| || || ||| |||||| || || ||||| | || | | | | Sbjct 1071999 AGCCGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGACAGTGCTG 1071940 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| ||||| ||||| | ||| |||| || |||| ||||| ||||||| Sbjct 1071939 CCATCCTCCAGCTGTTTACCAGCAAAAACCAGACGCTTCTGGTCCGGGGGAATGCCCTCC 1071880 Query 48669 TTGTCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||||| | ||| ||||| ||| ||| | || | ||||||||| | | Sbjct 1071879 TTGTC-TTGGGTTTTGGTTTTGACATTCTCCATGGTGTCCCTGGGCTCCACCTCAAGGGC 1071821 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || ||| || || ||||| ||||||||| Sbjct 1071820 GATGGTCTTGTCCATCAGGGTCTTCACAAACATCTGCATC 1071781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380898592227846