Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq105 196 9e-45 seq51 163 5e-35 seq25 152 1e-31 seq44 105 1e-17 seq35 105 1e-17 seq6 93.3 8e-14 >seq105 Length=4905094 Score = 196 bits (216), Expect = 9e-45 Identities = 189/243 (78%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 4707924 AGCAGCTGGCAGCCATTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 4707983 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || || |||||||| ||||| || | ||||||| |||||| Sbjct 4707984 TCCCGGAGGAGGCCGGCCGTGTTCGACAGTCCGGCGTTCTCGGCCTTGAGCGTCTTCACC 4708043 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 4708044 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 4708103 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | |||||| ||| | |||||||| ||||| || ||||||| ||| || Sbjct 4708104 CGGTTCCGCAGCCGCTTACGCTCCACTTTGATGCGCTCCTGATCTTCCATGTTGATGGGG 4708163 Query 241625 GAC 241627 ||| Sbjct 4708164 GAC 4708166 >seq51 Length=16359109 Score = 163 bits (180), Expect = 5e-35 Identities = 368/543 (68%), Gaps = 15/543 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| |||||||| |||| || |||||||| Sbjct 9671632 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGACATGTTCTC 9671691 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| ||| || ||||| | || ||| | | | |||| ||||||||| Sbjct 9671692 CATAAAGTCAAATGGGTTTTCTACTTTGAACAGCTTGTTAAAACCCA---GTTCCAGCAT 9671748 Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | || || ||| | || |||| | || ||| | ||| ||||| || || || Sbjct 9671749 TAGCCTGTCTGCCACGAATTCAATGTGCTGTGTCATCAAAGTGCAATTCATTCCAATCAG 9671808 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTA-TCTGCACGGCTTCCCCCACAA 48074 || |||||| || | || || || |||| |||| |||| || || | | | | | Sbjct 9671809 TTTCAAGGGCAAGGCTTCCGTAAGGAATTCCTGTTCTACTCTG-ACAGCATTCACAATGA 9671867 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | | | || | |||||| ||||||| ||||||| ||| ||| ||||| Sbjct 9671868 TTTCTTGTACTCTCTGCTCTGAAGGTTTGTGCAGCAGGTGTTTGAACACGAG---GCAGG 9671924 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | |||||| || || || | || || | | ||||| || ||| || | Sbjct 9671925 CAAAGTCACAGTGCAAACCCTCATCTCTGCGAATAACTTCATTGGAAAACGTGAGGCCTG 9671984 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | | ||||||||||| || | || || || || ||||||||||||| Sbjct 9671985 GCATTAGTCCTCCTTTCTTGAGCCAGAAGATGGAGGCAAACGAACCGGAGAAGAAGATGC 9672044 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATC 48313 | |||||||| || || || | |||||||| | || | ||| ||||| ||| Sbjct 9672045 CTTCCACTGCTGCAAAGGCTACAACTCTCTCTCC-ATAGGTACTTTCTTTGTCGCCAATC 9672103 Query 48314 C-AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 | | | ||| ||||| |||||||||||||| | || ||||| ||||| |||| | ||| Sbjct 9672104 CAACGCAAG-GCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCCGTGGCACTGAA 9672162 Query 48373 GAG 48375 ||| Sbjct 9672163 GAG 9672165 >seq25 Length=39250790 Score = 152 bits (168), Expect = 1e-31 Identities = 556/857 (65%), Gaps = 25/857 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||| ||||| | |||||||| |||| || |||||||| Sbjct 34005943 CTGATACTCGCCTACTCTCTTCTCAGAGAAGCTCGTCTTCCCTTCCAGGGAAATGTTCTC 34005884 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||| ||| || | ||| | || ||| | | | |||| ||||||||| Sbjct 34005883 CATAAAGTCAAATGAGTTTTCTACTTTGAACATCTTGTTAAAACCCA---GTTCCAGCA- 34005828 Query 47959 GTGATCC-----GCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || ||| | || | || | || ||| | ||| ||||| | || Sbjct 34005827 -TTAGCCTGTTTGCCACGAATTCAACGTGCTGTGTCATCAAAGTGCAATTCATTTCAATC 34005769 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 | ||||| ||| |||| | | || |||| |||||| || || | | | | Sbjct 34005768 AACTTCACGG-CAAGGCCTCCATATGGAATTCCTGTTCTATCCTGACAGCATTCACTATG 34005710 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG-CATAGAGCATGCA 48132 || | | || | |||||| ||||||| ||||||| ||| ||| ||| ||| Sbjct 34005709 ATTTCTTGTACTCTCTGCTCTGAAGGTTTGTGCAGCAGGTGTTTGAACAT-GAG---GCA 34005654 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | |||||| || || || | ||| || || | ||||| || ||| || Sbjct 34005653 GGCAAAGTCACCGTGCAAACCCTCATCTCTGCTAATAAGTTCCTTGGAAAACGTGAGGCC 34005594 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | | ||||||||||| || | || || || || ||||||||||| Sbjct 34005593 TGGCATTAGTCCTCGTTTCTTGAGCCAGAAGATGGATGCAAACGAACCGGAGAAGAAGAT 34005534 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||| |||||||| || || || | | ||||||| | | ||| | ||||| || Sbjct 34005533 GCCTTCCACTGCTGCAAAGGCTACAACTCGCTCTCCGTAGGTAGCTTCTTTGTCGCCAAT 34005474 Query 48313 CCAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 ||| | ||| ||||| |||||||||||||| | || ||||| ||||| ||| | || Sbjct 34005473 CCAACGCAAG-GCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCAATGACATTGA 34005415 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT-AGTGAGCAGCTTTGCGTACATC 48430 |||| | || | || ||| | | || || | | || || | ||||| Sbjct 34005414 AGAGATACT--CCCTTTCCTTGGAACCTTTAATGTGTCAATCAGGAGACT---ATACATT 34005360 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 ||||| || | || || ||||| || ||||| || ||||| | |||||| | | Sbjct 34005359 TCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAACGGGCCTCTGTAATC 34005300 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 || |||||| | |||| ||||| ||| ||||||| ||||| |||| | ||| Sbjct 34005299 TGAACTTCTTGGCTAAATCGCTCCACCAGGTTCTCATGCACTAT-GCATCACTGGTTGCA 34005241 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 ||||| || || | || | ||||| | ||| | | | || || | |||| | Sbjct 34005240 AAGAAAGCCAGAGCGTGGGATATGAAATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGC 34005181 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTG 48670 || | |||| || |||| || || | ||||| ||||| || ||||| || Sbjct 34005180 TGAGTGGCTTTAGAAAGATCCAGCTCCTCGGCCGTCCAAAAGGAGGCCTCAGCTTTCTTA 34005121 Query 48671 TACATGCCCCATATGTC 48687 ||||| ||| ||||| Sbjct 34005120 TACATCTGCCAAATGTC 34005104 >seq44 Length=17908991 Score = 105 bits (116), Expect = 1e-17 Identities = 263/392 (67%), Gaps = 13/392 (3%) Strand=Plus/Minus Query 38801 CAGGAACATAACCAGGTCAGGCTTGGGTAGACCCACATCTGGTCCCATGCACCACTCCAC 38860 ||| |||| |||||||| ||| |||| || ||||| ||||| | ||||||| |||| Sbjct 1860906 CAGAAACAGCACCAGGTCTGGCGTGGGGAGGCCCACGTCTGGCTGCTTGCACCAATCCAG 1860847 Query 38861 GGGCATGTCAGGTTTCGC-GCTGCTGAATGCCACACCGGAGAATGCGTACCTGTCCAACA 38919 || | | ||| || ||| | || | || || ||||| |||||| ||||| | Sbjct 1860846 GGAGAAGCTCTCTTTGGCCGCTA-TAAAGGTGACCCCAGAGAAGACGTACCGGTCCACGA 1860788 Query 38920 CCAGGCTCGTCCCCCGTTCCAGCTT----CTGCTTCATCAGGGGCACCAGCTCCCACCTG 38975 | | | | ||| | |||| ||| ||| || | || || ||| ||||||| | | Sbjct 1860787 CGAAGGTGAAGCCCTGGTCCAACTTGTCCCTGATTAAACAAGG-CACTCGCTCCCAGCGG 1860729 Query 38976 TTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTCTCCAGGTAC 39035 ||||| ||||||||||||| || | |||||| ||| ||| | || |||||| ||| Sbjct 1860728 TTGGCAGAGAAGAGCAGGTACACCGAGTGGTCCCCCATCTCGATTTTTTTCTCCAAGTAT 1860669 Query 39036 GAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTCGGGGAACCTCATCAGCTCGG-CCGG 39094 ||| | | | ||| || || || | | | || ||||| | |||||||| || | Sbjct 1860668 GAGATCAGAAGCTTCCCAATTTCTGTTGATATTTCCGGGAAAAGGAGCAGCTCGGCCCTG 1860609 Query 39095 TCTCCCGCTACCTTGCAGAGCCT--CCACCAGCTTTTGACACTGTGTGGTCTTTCCAGCC 39152 | | || || ||| ||| | |||||||||| | ||| ||| | || ||||| Sbjct 1860608 TGGCTGGCAAC---GCACAGCGTGACCACCAGCTTGCGGTTCTGCGTGCTTTTGCCAGCG 1860552 Query 39153 CTGTCCACTCCTTCCAATACCACAAGAGCTCC 39184 | ||| || ||||||| || || || | ||| Sbjct 1860551 CGGTCTACACCTTCCAGAACAACCAGGGTTCC 1860520 >seq35 Length=22427959 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||| | |||||||||||||||||| ||| Sbjct 214638 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCTTTTGATGGTGCCCAGGTTCTGCTGG 214697 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| ||| |||||| |||||||||||||| |||| ||| |||||| ||| Sbjct 214698 TTGCTCTTCCGGTTACAAGAATCTTTGTAGAGCATGTACGGGGTCCCTGTCTCTGTCTGA 214757 Query 213648 GAC 213650 ||| Sbjct 214758 GAC 214760 >seq6 Length=85730050 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 ||||| || ||||||||||| ||||| | ||||| || | |||||||||| ||| Sbjct 67819554 TTCACCTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCATTTGGAGGCG 67819495 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | || |||||||| ||||||||| |||||||||| Sbjct 67819494 GCGATGCGGTTCCTCATGCGCTTCCTCTCGGCCTTGATTCGTTCCTGGGACTCCATGTCG 67819435 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 67819434 ATGGGGGAC 67819426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931434965767680