Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq25 172 1e-37 seq51 145 1e-29 seq1 105 1e-17 seq92 98.7 2e-15 >seq25 Length=39250790 Score = 172 bits (190), Expect = 1e-37 Identities = 328/471 (70%), Gaps = 18/471 (4%) Strand=Plus/Plus Query 25601 TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCA 25660 |||| ||||||||| || ||||| |||||| | ||||| ||| ||| |||| | | Sbjct 34005231 TGGCTTTCTTTGCAACCAGTGATGC-ATAGTGCATGAGAACCTGGTGGAGCGATTTAGCC 34005289 Query 25661 GGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 ||||| ||| ||| |||||| |||||||| || ||||| || || || ||||| Sbjct 34005290 AAGAAGTTCAGATTACA--GAGGCCCGTTGTTTCTATGGCTTCCAAATTGCTATGGAAAA 34005347 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GACGTACATTACAGACGTCGCCGAGA 25777 | || ||||| ||||| | || ||||| ||| |||||| || | || | Sbjct 34005348 CATACATTCTGAAATGTAT---AGTCTCCTGATTGAC--ACATTAAAGGTTCCAAGGAAA 34005402 Query 25778 GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGG 25837 | || || || || ||| ||| || || | | |||| |||||| |||| Sbjct 34005403 GGGAGTATCTCTTCAATGTCATTGAGACAATGCCTTGTGTGAAGAAGAAGGCAGATTGGG 34005462 Query 25838 CCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCT 25896 || || ||||| | | || || ||||| | || ||||| | ||||||||||| Sbjct 34005463 CCTTGCGTTGGATTGGC-GACAAAGAAGCTACCTACGGAGAGCGAGTTGTAGCCTTTGCA 34005521 Query 25897 GCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAG 25956 || ||||| |||||||| ||| |||||||||||| ||||||||||||||||| | | | Sbjct 34005522 GCAGTGGAAGGCATCTTCTTCTCCGGTTCGTTTGCATCCATCTTCTGGCTCAAG-AAACG 34005580 Query 25957 GGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCA 26015 |||| ||||| || || |||||||| || || || ||||| || |||||| | || Sbjct 34005581 AGGACTAATGCCAGGCCTCACGTTTTCCAAGGAACTTATTAGCAGAGATGAGGGTTTGCA 34005640 Query 26016 CAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 | | || ||||||||||| | | || ||| |||| ||||||||||| Sbjct 34005641 CGGTGACTTTGCCTGCCTCATGTTCA---AACACCTGCTGCACAAACCTTC 34005688 >seq51 Length=16359109 Score = 145 bits (160), Expect = 1e-29 Identities = 322/475 (68%), Gaps = 21/475 (4%) Strand=Plus/Minus Query 25601 TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCA 25660 |||| |||||||||||| ||| || || ||| | || || ||| ||| |||| | | Sbjct 9672350 TGGCTTTCTTTGCAGCCAGTGACGGCATCGTGCATGAAAACCTGGTGGAGCGATTTAGCC 9672291 Query 25661 GGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 || | ||| ||| |||||| | ||||| |||||||| || || || || || Sbjct 9672290 AAGACATTCAGATTACA--GAGGCCCGCTAGTTCTATGGTTTCCAAATTGCAATGGATAA 9672233 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGA 25775 | || ||||| ||||| | || ||||| || ||||||| ||| | || Sbjct 9672232 CATACATTCTGAAATGTAT---AGTCTCCTGATTGACACTTACATTAAAGAGTCCAAAGA 9672176 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || || || || |||||| ||| || || | | |||| |||||| || Sbjct 9672175 AAGGGAGTATCTCTTCAGTGCCACGGAGACAATGCCTTGTGTGAAGAAGAAGGCAGATTG 9672116 Query 25836 GGCCATGAAGTGGAT---CAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||| || ||||| | ||| | || ||| | ||| ||| | | |||||||| Sbjct 9672115 GGCCTTGCGTTGGATTGGCGACAAAGAAAG---TACCTATGGAGAGAGAGTTGTAGCCTT 9672059 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||| || ||||| |||||||| ||| |||||||||||| ||||||||||||||||| | Sbjct 9672058 TGCAGCAGTGGAAGGCATCTTCTTCTCCGGTTCGTTTGCCTCCATCTTCTGGCTCAAGAA 9671999 Query 25953 GAAGGGGACCA-TGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 | | |||| | |||| || || |||||||| || | || |||| || |||||| Sbjct 9671998 -AGGAGGACTAATGCCAGGCCTCACGTTTTCCAATGAAGTTATTCGCAGAGATGAGGGTT 9671940 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 | ||| | || ||||||||||| | | || ||| |||| ||||||||||| Sbjct 9671939 TGCACTGTGACTTTGCCTGCCTCGTGTTCA---AACACCTGCTGCACAAACCTTC 9671888 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| || ||||||||||| ||||| || ||||||||||||| ||||||||||| ||| Sbjct 9671709 AACCCATTTGACTTTATGGAGAACATGTCCCTGGAAGGGAAGACGAACTTCTTTGAGAAG 9671650 Query 26305 AGGGTCGGCGACTATCA 26321 || || ||||| ||||| Sbjct 9671649 AGAGTAGGCGAGTATCA 9671633 >seq1 Length=111700974 Score = 105 bits (116), Expect = 1e-17 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | ||||||||||| || ||||| |||||||| ||| |||||| ||||| Sbjct 4139518 GGAGAGCGAGTTGTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCCGGTTCATTTGCC 4139577 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 ||||||||||||||||| || | |||| ||||| || || |||||||| || || Sbjct 4139578 TCCATCTTCTGGCTCAAGAAG-CGAGGACTAATGCCTGGCCTCACGTTTTCCAATGAACT 4139636 Query 25992 CATCAGCAGGGACGAGG 26008 |||||||| || |||| Sbjct 4139637 TATCAGCAGAGATGAGG 4139653 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| || ||||||||||| ||||| || ||||||||||||| ||||||||||| ||| Sbjct 4141277 AACCCATTTGACTTTATGGAGAACATTTCCCTGGAAGGGAAGACGAACTTCTTTGAGAAG 4141336 Query 26305 AGGGTCGGCGACTATCA 26321 || || ||||| ||||| Sbjct 4141337 AGAGTAGGCGAGTATCA 4141353 >seq92 Length=6660306 Score = 98.7 bits (108), Expect = 2e-15 Identities = 125/169 (74%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 ||| | ||| | ||| | ||||||||||| | ||||| || ||||| | ||||| Sbjct 3254431 TACCTATGGAGTGCGAGTTGTAGCCTTTGCGACAGTGGAAGGAATCTTCTCT---GGTTC 3254375 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGCTGTACTTTTCCA 25984 ||||| |||| |||||||||||| | | | |||| | |||| || || | ||||||| Sbjct 3254374 ATTTGCATCCATTTTCTGGCTCAAGAA-ACGAGGACTAATGCCTGGCCTCTCATTTTCCA 3254316 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 | || || || ||||| || |||||| | || | |||||||||||||| Sbjct 3254315 ATGAACTTATTAGCAGAGATGAGGGTTTGCAATGTGATTTTGCCTGCCT 3254267 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| || ||||||||||| ||||| || ||||||||||||| ||||||||||| ||| Sbjct 3254061 AACCCATTTGACTTTATGGAGAACATTTCCCTGGAAGGGAAGACGAACTTCTTTGAGAAG 3254002 Query 26305 AGGGTCGGCGACTA 26318 || || ||||| || Sbjct 3254001 AGAGTAGGCGAGTA 3253988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928747248074880