Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq79 470 2e-127 seq24 163 3e-35 >seq79 Length=8777348 Score = 470 bits (520), Expect = 2e-127 Identities = 699/985 (71%), Gaps = 11/985 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| || || || || || | ||| || || || || || || || Sbjct 7086254 CAGATGCTCATCCAAGCACTGCACAGCAAAGAAGTCGACATCGGTATCAAACTTGTTGGC 7086195 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| | | | ||||||| || |||||| | ||||| ||||| || Sbjct 7086194 AAACAAGTGGTGCTGGCGC---AACATCCAGTTCAAGTCTCCAGCTCCGAAGACGCACAC 7086138 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| |||||| |||| |||||||| |||| || | || ||||| || || Sbjct 7086137 GGAGCGCACGTGGACGCCGCTGCAGGGCGGGTAGGGAGCCCCCTGGGCAACGTCGCCCTC 7086078 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | |||| |||||||| || |||||||| || || |||||||| || |||| ||||| Sbjct 7086077 GAAGTAGTGCCACTTGACGAACCTGGCGATGGCGTGCATGTCAGACATGTCATATTTACG 7086018 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 || ||| | || || || ||| | | || | ||| | ||||||||| || | || Sbjct 7086017 GTTCGAGGGCAGTGCGCCCGGGACGTCCGAAATCCTCTGAACGGTGGCCCAGAGATACTC 7085958 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCCGC 160409 || |||||||| ||||| | | ||| ||||| |||| || ||| | | | | | Sbjct 7085957 ATCAGGGCTGTAGGTGTCTTGCGCCCACTCCATAAACTTTCTGATGTTTTCATTTTCT-- 7085900 Query 160410 AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGT 160469 || |||| | || ||| ||| ||| ||||| |||||||||||||| || || ||| Sbjct 7085899 AGCACGTAACCCACATAGTCCCTGCGCACCACAAAATACGCGCTGCCGGAAAACATGGGT 7085840 Query 160470 ATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| ||| | ||||||| | ||||| || | | | || | ||| | Sbjct 7085839 GTTTTGAGAGGAGGCCGGGCTTTGTCGAGCCCGGTCTTTGTGAGCGTCCCATCCACGACT 7085780 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 ||| ||||||||||||| || || | | |||||| | |||||||| || ||| Sbjct 7085779 TCGTAATGCTTCTTCCACCTTTCCTCTTTATTGGCCGGCATGGGCTCCGTCTCCAGGCTG 7085720 Query 160590 TT--GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAA 160647 || | | |||| || || | |||| || ||| ||||| ||||| || || | || | Sbjct 7085719 TTCTGCCCCCGTA-AG-GACCTGAGCTTCTGGACAATCTCCAGGTTGGTTTTAATAGGGA 7085662 Query 160648 AGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCC 160707 | || | ||||||| |||||||| ||||||||| | || | || | | ||||||| Sbjct 7085661 AATCCATGCCGCACAGGTTTATCAAGTACTTCCAGTCTGCACCCATCCCATACAGGTCCT 7085602 Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767 ||||||| || | || |||||||| |||||||||||||| ||||| |||||||| || | Sbjct 7085601 TCATGCAGTTGAGGTCGGCCTGCACCCGGCTCCAGGAAGCATACACCACGTTCTCCAGCT 7085542 Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827 | |||||||| ||||||||| |||||||||| |||| ||| ||| || ||||| Sbjct 7085541 TGCTGGCCACGAAGACGTTACCGAAACACGATGCGATGCCCGACACAGCAGCCAAGAAGG 7085482 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | |||||||||||||| ||||| || | ||||| |||| ||||||||||| Sbjct 7085481 ACTCCTCGGATTTTCGGTCCACGTGAACGCAGTAGACATTCTGCGGCGTGTAGATGGCCC 7085422 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | |||| ||| ||||||||||| ||||| || || | |||||| || ||||| || |||| Sbjct 7085421 TCAGCAGCCTGTCGAACATCTCGATCTTGTGGTGAACCACGATGGAATAGGCAATTGGAA 7085362 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | ||| ||| || | |||||| | ||||||||| ||| ||||||| ||| | Sbjct 7085361 AGGCGGCCTCTTCCTGGCTCAGGTGTTCCACCAGGTACTTGCGCCTCTTGATGAAAGAGG 7085302 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 | || |||| |||||| ||| || Sbjct 7085301 CGCAGTCCCTGGTCATGCGGATGTA 7085277 >seq24 Length=44670279 Score = 163 bits (180), Expect = 3e-35 Identities = 224/312 (72%), Gaps = 1/312 (0%) Strand=Plus/Minus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| |||||||| || ||| | || || || || || |||||||||||| Sbjct 13137607 TAGAGGGTGAGGCAGGTTTTTCCTGAGATCGTCCCAGAACCAAAGGTATTGAAGAGGCAC 13137548 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | ||||| |||||||||| ||||| |||||| || ||||| ||||||| | ||| Sbjct 13137547 ATGTAACAGCCCTCGTCCTCCAGGGTGGCATTCCAGAAGGTTAGGGTTGAGTCACTGAGT 13137488 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || ||||| || | | | || | ||| |||| ||||| || |||| Sbjct 13137487 CCCAGATGTGTGATGTTTACTTTGTTTGTGTAGGCAGGCTGAAGCACAACTCCACTGTTC 13137428 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | ||||| || ||| || || || | | ||||| | |||||||| ||||| ||| Sbjct 13137427 TTACTGAAAGTAATCATATTTTCGGGACCCGAAGCCTTAACTTTCTGCCATGTTACAATC 13137368 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || || | | ||| |||| || || || || || || || || ||||| || ||| Sbjct 13137367 AGGACTTCCTGGTAAGTCCGCAGAGAGCACCTTAGGGAGGCAGGTGTATTCAGTAGCTCT 13137308 Query 168450 CGCTCA-TCTTG 168460 | ||| ||||| Sbjct 13137307 CTTTCATTCTTG 13137296 Score = 127 bits (140), Expect = 2e-24 Identities = 169/234 (72%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 167871 CCATTGCTAAGCGTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATC 167930 || ||||| | ||||| || | ||||| ||| | |||| || || |||| ||| ||| Sbjct 13140698 CCTTTGCTCACGGTTTGTCGGAACTCCGTCACATTCCCCAGGTGCAGCACCTGGCAGATC 13140639 Query 167931 ACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTT 167990 ||||| || || |||||||| | || ||||| || || | ||||| || || Sbjct 13140638 ACCTCC---TTCCCCACTTGACTGCTGGGGTCTTTGACCTGCAGGATGCTGGTGACGGAC 13140582 Query 167991 GTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACC 168050 || || |||||| | ||| | | | | | |||||||||||||||||| || | |||||| Sbjct 13140581 GTGGTCCCATTGGGGTGTGAGAGGCTCTCCGTGCTGTTCTCAATCCCCGACTCGGCCACC 13140522 Query 168051 TTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAG 168104 |||||| | || || || || || || || ||||||||||| ||||||||| Sbjct 13140521 TTCCAGGAGATCCTTGGGGCCGGGCGGGCAGTGGCAGAGCAGGTGATATTTAAG 13140468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577158577553520