Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq25 91.5 2e-13 seq1 86.0 7e-12 seq92 84.2 3e-11 seq51 82.4 9e-11 >seq25 Length=39250790 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCT-CCTTCGCCGA 65078 |||||||||| | ||||| || ||| ||| | |||||| ||| ||| || || Sbjct 34005445 AGAAGAAGGCAGATTGGGCCTTGCGTTGGATTGGCGACAAAGAA--GCTACCTACGGAGA 34005502 Query 65079 GCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTA 65137 ||| || | || ||||| ||||| || |||||||||||||| || || ||| | | Sbjct 34005503 GCGAGTTGTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCCGGTTCGTT-TGCATCCA 34005561 Query 65138 TTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTT 65197 | | ||| | ||||| || || || ||||||||||| || || || ||||||||| Sbjct 34005562 TCTTCTGGCTCAAGAAACGAGGACTAATGCCAGGCCTCACGTTTTCCAAGGAACTTATTA 34005621 Query 65198 CCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 | ||||||||||| | ||| || |||||| Sbjct 34005622 GCAGAGATGAGGGTTTGCACGGTGACTTTGCC 34005653 >seq1 Length=111700974 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 || ||||||||||||||||| |||||| ||| || |||||||| ||||||||||||||| Sbjct 4141277 AACCCATTTGACTTTATGGAGAACATTTCCCTGGAAGGGAAGACGAACTTCTTTGAGAAG 4141336 Query 65503 CGAGTTGGGGACTAT 65517 |||| || || ||| Sbjct 4141337 AGAGTAGGCGAGTAT 4141351 >seq92 Length=6660306 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 || ||||||||||||||||| |||||| ||| || |||||||| ||||||||||||||| Sbjct 3254061 AACCCATTTGACTTTATGGAGAACATTTCCCTGGAAGGGAAGACGAACTTCTTTGAGAAG 3254002 Query 65503 CGAGTTGGGGACTA 65516 |||| || || || Sbjct 3254001 AGAGTAGGCGAGTA 3253988 >seq51 Length=16359109 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 || ||||||||||||||||| ||||| ||| || |||||||| ||||||||||||||| Sbjct 9671709 AACCCATTTGACTTTATGGAGAACATGTCCCTGGAAGGGAAGACGAACTTCTTTGAGAAG 9671650 Query 65503 CGAGTTGGGGACTAT 65517 |||| || || ||| Sbjct 9671649 AGAGTAGGCGAGTAT 9671635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596506945277760