Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq51 120 4e-22 >seq51 Length=16359109 Score = 120 bits (132), Expect = 4e-22 Identities = 289/436 (66%), Gaps = 12/436 (3%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| ||| ||||| ||||||||| || | ||| || |||||| | Sbjct 9671921 CAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCGAATAACTTCATTGGAAAACGTGAGG 9671980 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||||| |||| ||| || ||||| || || || || || || || ||||| Sbjct 9671981 CCTGGCATTAGTCCTCCTTTCTTGAGCCAGAAGATGGAGGCAAACGAACCGGAGAAGAAG 9672040 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA---ACTGTATTTATTGCTC 18334 || || || || || || |||| | ||| || || | ||| | ||| | || | Sbjct 9672041 ATGCCTTCCACTGCTGCAAAGGCTACAACTCTCTCTCCATAGGTACTTTCTTTGTCGC-C 9672099 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | ||||| ||||| ||| | | | ||| || || |||| | ||| Sbjct 9672100 A--ATCCAACGCAAGGCCCAATCTGCCTTCTTCTTCACACAAGGCATTGTCTCCGTGGCA 9672157 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 | || | || || |||||||||| ||||| || |||||||| || | | | |||| Sbjct 9672158 CTGAAGAGATACTCCCTTTCTTTGGACTCTTTAATGTAAGTGTCAATCAGGAGACTATAC 9672217 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||||||||||||| | ||||| || || || |||| ||| ||| | | ||||| | | Sbjct 9672218 ATTTCAGAATGTATGTTATCCATTGCAATTTGGAAACCATAGAACTAGCGGGCCTCTGTA 9672277 Query 18515 TATTGAATCTC---GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 ||||| || ||| ||||| || |||| || |||| || || |||||| Sbjct 9672278 ATCTGAATGTCTTGGCT---AAATCGCTCCACCAGGTTTTCATGCACGATGCCGTCACTG 9672334 Query 18572 GATGCGAAAAATGCCA 18587 | ||| || || |||| Sbjct 9672335 GCTGCAAAGAAAGCCA 9672350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731795135143200