Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq70 98.7 3e-15 seq8 95.1 4e-14 >seq70 Length=10445819 Score = 98.7 bits (108), Expect = 3e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || |||||||| || || || || ||||||| ||||| ||||||||||| | ||| Sbjct 1147593 GTCTTGACAGCTGTGTCGATGAGCCCCTCACGACCGCCCATGGCATGGAAGAAGAACTCG 1147534 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 ||| || || | | |||| |||| ||||| || || ||| ||| || | Sbjct 1147533 GTGGGTGTGAGACCAGCCAGGTAGGAATTCTCCACGAAGCCTCGGCTCTCAGGCCCATAG 1147474 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 || |||| | ||||| ||||| |||| || || | | || ||||||| ||||| || Sbjct 1147473 TCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTAAACCCAAATGGGATCCGCTTGCCC 1147414 Query 302800 TCAACGTTCTGCTGTCC 302816 || ||||||||||| || Sbjct 1147413 TCCACGTTCTGCTGCCC 1147397 >seq8 Length=79101790 Score = 95.1 bits (104), Expect = 4e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 448866 GTTCTGGAATTAAATAATCAAGCTACGCCCGAGGAAATCAAGAAGGCATATAAACGACTC 448925 ||||||| | || | || | ||| |||| ||||| || |||||||| ||| | | | Sbjct 11063529 GTTCTGGGAGTACAGAAATATGCTTCGCCAGAGGACATTAAGAAGGCTTATCACAAAGTG 11063470 Query 448926 GCAATTAAACATCATCCTGATAAAAATCCAGATAATAAAGCAGAGGCAGAGGAGAA-ATT 448984 ||| |||| || ||||||||||| ||||| ||||||| ||| ||||| ||||| ||| Sbjct 11063469 GCACTTAAGTGGCACCCTGATAAAAACCCAGAAAATAAAGAAGAAGCAGA-GAGAAGATT 11063411 Query 448985 CAAAGAGATTTCTCAAGCTTATGAAATTGTAACAAATAAAGAAAAA 449030 ||||| | || |||| || ||| | || ||||| | |||||| Sbjct 11063410 TAAAGAAGTAGCTGAAGCATACGAAGTGTTATCAAATGATGAAAAA 11063365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471659157915474