Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq60 147 2e-30 seq5 96.9 3e-15 seq8 82.4 6e-11 >seq60 Length=11957090 Score = 147 bits (162), Expect = 2e-30 Identities = 228/324 (70%), Gaps = 4/324 (1%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || || || || || || ||||| || ||||| | ||||| || ||||| || || Sbjct 1830536 AGATCTGTTTCAGGATTTTCACACTCAGGACAGAGAACAAATTTTTTAATGAATCCGTCC 1830477 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 | || ||| || | |||| | || || || || ||||| ||| | || || || || Sbjct 1830476 AACATGTCTTGCAGCTTATTCGCCTCATGCGATCCATTGACAATGTAACGGTCATTCTTA 1830417 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 ||| | ||| || || || |||||||| || || || || || || || || | | Sbjct 1830416 ACATCAAACTGGGTCTGTGCTCCCAGCTCACAACCAAAATATTTGGTGGGATACGTTGGA 1830357 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || || ||||||||| || | || ||||||||| || ||||||||||| || || Sbjct 1830356 GGCCGATTAAGCGCCTTTGCAACGTCAACCATGTTGACTATAACAGTCTTGATTCCATTT 1830297 Query 34555 CCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612 || || || || |||||||| |||| || ||||| |||||||| |||||| ||| | Sbjct 1830296 CCTTTGCCCTCAACCTTGGCAATCAGA--CGGGGCATCTTGTAGCGATAGAACTGGTCTG 1830239 Query 34613 CCACATTGCGGTTAACGTTCACAG 34636 |||| ||||||| ||||| |||| Sbjct 1830238 ACACACTGCGGTTGACGTTGACAG 1830215 >seq5 Length=88520344 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || ||||| || || | || ||||| ||||| ||| | || |||||| Sbjct 40362835 AACATGCACATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCA 40362776 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 | ||| || ||| | || ||| || || ||||| || ||| | ||| ||| Sbjct 40362775 G-CGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATTCCCCCGGAC 40362717 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || |||| ||| ||||||||||||||||||| | | || | |||| ||| Sbjct 40362716 CAGCAGCGTCTGATTTTTGCTGGTAAACAGCTGGAGGATGGCCGCACTCTCTCGGACTAC 40362657 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||| | || ||||| ||||| | | ||||| || || Sbjct 40362656 AACATCCAGAAAGAGCCCACCCTGCACTTGGTGCTGCGTCTGCGTGGTGG 40362607 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || || | || ||||| ||||| ||| | || |||||| Sbjct 1010859 AATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTGGAGCCCAG 1010800 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || ||| || || ||||| || ||| | ||| ||| || Sbjct 1010799 CGACACCATCGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCCCCGGACCA 1010740 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || |||| ||| ||||||||||||||||||| | | || | |||| ||||| Sbjct 1010739 GCAGCATCTGATTTTTGCTGGTAAACAGCTGGAGGATGGCTGCACTCTCTCGGACTACAA 1010680 Query 110452 CAT-TCAAAAAGAATCTACGTTGCACATGGTG 110482 ||| || ||||| || || ||||| ||||| Sbjct 1010679 CATCACAGAAAGAGTCCACCCTGCACTTGGTG 1010648 >seq8 Length=79101790 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || ||||| || || | || | ||| ||||| ||| | || ||||| Sbjct 4905559 AACATGCAGATCTTTGTGAAGACCCTGACGGCCAAGACCATCACCCTTGAGGTTGAGCCC 4905500 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | || ||| || || ||||| || ||| | ||| ||| Sbjct 4905499 AGCGACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCCCCGGAC 4905440 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || |||| ||| ||||||||||||||||||| | | || | ||| ||| Sbjct 4905439 CAGCAGCGTCTGATTTTTGCTGGTAAACAGCTGGAGGATGGCCGCACTCTCTTGGACTAC 4905380 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||| || || ||||| ||||| | | ||||| || || Sbjct 4905379 AACATCCAGAAAGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGTGGTGG 4905330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412799325278186