Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 1e-13 seq8 82.4 6e-11 >seq5 Length=88520344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||| || || | |||||||| ||||| ||| | || |||| | | Sbjct 1010859 AATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTGGAGCCCAG 1010800 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || ||| || || || || || ||| | ||| ||| || Sbjct 1010799 CGACACCATCGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCCCCGGACCA 1010740 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || |||| ||| ||||||||||||||||| | | || | |||||||||| Sbjct 1010739 GCAGCATCTGATTTTTGCTGGTAAACAGCTGGAGGATGGCTGCACTCTCTCGGACTACAA 1010680 Query 107735 CAT-TCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || || ||||| || ||||| ||||| || Sbjct 1010679 CATCACAGAAAGAGTCCACCCTGCACTTGGTGCTG 1010645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || ||||| || || | || ||||| ||||| ||| | || |||| | Sbjct 40362835 AACATGCACATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCA 40362776 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | ||| || ||| | || ||| || || || || || ||| | ||| ||| Sbjct 40362775 G-CGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATTCCCCCGGAC 40362717 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || |||| ||| ||||||||||||||||| | | || | |||||||| Sbjct 40362716 CAGCAGCGTCTGATTTTTGCTGGTAAACAGCTGGAGGATGGCCGCACTCTCTCGGACTAC 40362657 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || || ||| | || ||||| ||||| || | |||| || || Sbjct 40362656 AACATCCAGAAAGAGCCCACCCTGCACTTGGTGCTGCGTCTGCGTGGTGG 40362607 >seq8 Length=79101790 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || ||||| || || | || | ||| ||||| ||| | || ||| | Sbjct 4905559 AACATGCAGATCTTTGTGAAGACCCTGACGGCCAAGACCATCACCCTTGAGGTTGAGCCC 4905500 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||| || | | | || ||| || || || || || ||| | ||| ||| Sbjct 4905499 AGCGACACCATTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCCCCGGAC 4905440 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || |||| ||| ||||||||||||||||| | | || | ||||||| Sbjct 4905439 CAGCAGCGTCTGATTTTTGCTGGTAAACAGCTGGAGGATGGCCGCACTCTCTTGGACTAC 4905380 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || || ||||| || ||||| ||||| || | |||| || || Sbjct 4905379 AACATCCAGAAAGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGTGGTGG 4905330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398835955264978