Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq8 127 2e-24 seq5 127 2e-24 seq93 98.7 8e-16 seq1 98.7 8e-16 seq124 95.1 9e-15 seq29 89.7 4e-13 seq83 82.4 6e-11 seq61 82.4 6e-11 >seq8 Length=79101790 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||||||||| || || ||||| ||||| || ||||| || ||| Sbjct 4905330 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAG 4905389 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || ||||| |||||| | |||| | ||||| ||||| ||| Sbjct 4905390 AGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGA 4905449 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| ||||||| | || | ||||| | || || Sbjct 4905450 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 4905509 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || ||| | || | ||| || ||||| |||||||| || Sbjct 4905510 TCAAGGGTGATGGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCATGTT 4905559 >seq5 Length=88520344 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||||||||| || || |||| ||||| || ||||| || |||| Sbjct 40362607 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAG 40362666 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || ||||| |||||| | |||| | ||||| ||||| ||| Sbjct 40362667 AGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGA 40362726 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| ||||||| | || | ||||| | | || || Sbjct 40362727 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTC-GCTGGCTCCACC 40362785 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || ||||| || | ||| || ||||| || ||||| || Sbjct 40362786 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATGTGCATGTT 40362835 Score = 120 bits (132), Expect = 2e-22 Identities = 160/221 (72%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 29568 CAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTG-AATGTTATAATCCGCAATGGTGC 29626 || |||||||||||| || || ||||| ||||| || ||||| || |||| | |||| Sbjct 1010639 CAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGTGATGTTGTAGTCCGAGAGAGTGC 1010698 Query 29627 GAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCT 29686 ||| || || ||||| |||||| | |||| ||||| ||||| ||||| |||| Sbjct 1010699 AGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGATGCTGCTGGTCCGGGGGAATGCCCT 1010758 Query 29687 CTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAG 29746 | |||||||| | ||| ||||||| | || | ||||| | || || ||||| | Sbjct 1010759 CCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCAAGGG 1010818 Query 29747 TTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || ||||| || | ||| || ||||| ||||||||| Sbjct 1010819 TGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATT 1010859 >seq93 Length=6471344 Score = 98.7 bits (108), Expect = 8e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 29568 CAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCG 29627 || |||||||||||| || || |||| ||||| || ||||| || |||| | ||||| Sbjct 5958117 CAGACGCAGCACCAAGTGCAG-GTGGGATCTTTCTGGATGTTGTAGTCCGAGAGAGTGCG 5958059 Query 29628 AGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTC 29687 ||| | || |||||||||||| | ||| | ||||| || || ||||| ||||| Sbjct 5958058 GCCATCCACCAGCTGTTTGCCAGCAAAAGTCAGACGCTGCTGGTCTGGGGGAATGCCCTC 5957999 Query 29688 TTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT-TCAAGAG 29746 |||||||| | ||| ||||| | || | |||||| | || ||| ||||| | Sbjct 5957998 CTTGTCTTGGATTTTAACCTTGACTTTCTCGATGGTGTCACGGGGCTC-ACTCTCAAGGG 5957940 Query 29747 TTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | | || ||||| | | ||| || ||||| |||||||| Sbjct 5957939 TAGTGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 5957900 >seq1 Length=111700974 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||||||||| || || || || || || || ||||| ||||||| Sbjct 26898453 CCACCACGCAGACGCAGCACCAAGTGCAGGGTCGACTC-TTCTGGATGTTGTAATCCG-- 26898509 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || ||||| |||||| | |||| | ||||| | || ||| Sbjct 26898510 AGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAAAATCAGACGCTGCTGGT-TGGGGGA 26898568 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| ||||||| | || | ||||| | || | Sbjct 26898569 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCCCC 26898628 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || ||||| | | ||| || ||||| || ||||| || Sbjct 26898629 TCAAGGGTGATGGTCTTGCCTGCCAGGGTCTTCACAAAGATGTGCATCTT 26898678 >seq124 Length=2835626 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||||||||| || || ||||| ||||| || ||||| || | || | |||| | Sbjct 1071996 CGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTGCGAGACAGTGCTGCCA 1071937 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| |||||| | | || | | ||| ||||| ||||| ||||| ||| Sbjct 1071936 TCCTCCAGCTGTTTACCAGCAAAAACCAGACGCTTCTGGTCCGGGGGAATGCCCTCCTTG 1071877 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| ||| ||||||| | || | ||||| | || || ||||| | || Sbjct 1071876 TCTTGGGTTTTGGTTTTGACATTCTCCATGGTGTCCCTGGGCTCCACCTCAAGGGCGATG 1071817 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||| | | | ||| || ||||| |||||||| Sbjct 1071816 GTCTTGTCCATCAGGGTCTTCACAAACATCTGCAT 1071782 >seq29 Length=30315017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 29562 TCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAAT 29621 ||| ||||| ||||| |||| || || || |||||| | | ||||| || || | | Sbjct 6174640 TCCTCTCAAGCGCAGGACCAGGTGCAGAGTCGATTCTCT--GGATGTTGTAGTCAGACAG 6174583 Query 29622 GGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAAT 29681 |||||| ||| || || || || || ||| | |||| || ||||| || || | || Sbjct 6174582 GGTGCGGCCATCTTCCAGCTGCTTCCCCGCAAAGATCAGCCTCTGCTGGTCAGGAGCGAT 6174523 Query 29682 ACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 || | |||||||| | || |||||| | || | |||||| | || || || Sbjct 6174522 GCCTGCCTTGTCTTGGATCGTTGCCTTGACACTCTCAATGGTGTCACTGGGCTCGACCTC 6174463 Query 29742 AAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || | || ||||||||||| ||||| ||| | ||||||||| Sbjct 6174462 CAGGGTGACGGTCTTGCCAGTTAAAGTTTTCACAGAGATCTGCATT 6174417 >seq83 Length=8071411 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||||||||| || || |||| ||||| || ||||| || |||| Sbjct 6415558 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCG-- 6415501 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| |||||| | |||| ||||| | || ||| Sbjct 6415500 AGGGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGATGCTGCTGGT--GGGGGA 6415443 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACA 29712 || ||||| |||||||| | | | ||||||| Sbjct 6415442 ATGCCCTCCTTGTCTTGGATTCTGGCTTTGACA 6415410 >seq61 Length=11583899 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||||||||| || || |||| ||||| || ||||| || |||| Sbjct 4384787 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGTCTCTTTCTGGATGTTGTAGTCCGAG 4384728 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||| ||| || || ||||| | |||| | || | ||||| ||| | ||| Sbjct 4384727 AGCATGCGGCCATCCTCCAGCTGTTTACTAGCAGAACTCCGACGCTGCTGGTCCAGGGGA 4384668 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| ||||||| | || | |||| | | || | Sbjct 4384667 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTC-AATGTGTTGCAGGGCTCACCC 4384609 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || || || | || || | ||| || |||| |||||||| Sbjct 4384608 ACAAGGGTGATGGTCTGACCCGTCAGGGTCTTCTCAAAGATCTGCAT 4384562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385179753794682