Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq79 376 3e-99 seq48 132 6e-26 seq24 107 2e-18 >seq79 Length=8777348 Score = 376 bits (416), Expect = 3e-99 Identities = 643/930 (69%), Gaps = 7/930 (1%) Strand=Plus/Minus Query 162056 GCACCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTT 162115 || ||| || ||| || | |||| ||| || | ||||| || || || | ||| | Sbjct 7086273 GCTCCAAGGCCTTCTGCCTCAGATGCTCATCCAAGCACTGCACAGCAAAGAAGTCGACAT 7086214 Query 162116 CCTCATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCC 162175 | ||| |||||||| || |||| ||| ||| | | || ||||| || | || | Sbjct 7086213 CGGTATCAAACTTGTTGGCAAACAAGTGGTGCTGGCGC---AACATCCAGTTCAAGTCTC 7086157 Query 162176 CCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCC 162235 | | |||||| ||||||||||| |||||||| ||||||||||| ||||| || | |||| Sbjct 7086156 CAGCTCCGAAGACGCACACGGAGCGCACGTGGACGCCGCTGCAGGGCGGGTAGGGAGCCC 7086097 Query 162236 CATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGT 162295 | | | | || || |||||| |||| |||||||| |||||||| | ||| || ||||||| Sbjct 7086096 CCTGGGCAACGTCGCCCTCGAAGTAGTGCCACTTGACGAACCTGGCGATGGCGTGCATGT 7086037 Query 162296 CGGAGGTGTCGTACTTGTACACT--GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTG 162353 | || |||| || | ||| | || |||| || || || || ||| | ||||| Sbjct 7086036 CAGACATGTCATA--TTTACGGTTCGAGGGCAGTGCGCCCGGGACGTCCGAAATCCTCTG 7085979 Query 162354 TAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTC 162413 | || ||||| || | || || || || || || || | || ||||||||| |||| Sbjct 7085978 AACGGTGGCCCAGAGATACTCATCAGGGCTGTAGGTGTCTTGCGCCCACTCCATAAACTT 7085919 Query 162414 CCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGC 162473 |||| ||| || | ||| | |||| || ||| |||| ||| | ||| ||||| Sbjct 7085918 TCTGATGTTTTCATTTTCTAGCACGTAACCCACATAGTCCCTGCGCACCACAAAATACGC 7085859 Query 162474 GCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGAC 162533 ||| || ||||||| |||| | | |||||| | ||||||| | || || || Sbjct 7085858 GCTGCCGGAAAACATGGGTGTTTTGAGAGGAGGCCGGGCTTTGTCGAGCCCGGTCTTTGT 7085799 Query 162534 TACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGG 162593 | | | || || ||||| ||| |||| ||||||| || ||| ||| | | Sbjct 7085798 GAGCGTCCCATCCACGACTTCGTAATGCTTCTTCCACCTTTCCTCTTTATTGGCCGGCAT 7085739 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | | || ||||| || ||||| | |||| |||| | | |||| | || ||||| || Sbjct 7085738 GGGCTCCGTCTCCAGGCTGTTCTGCCCCCGTAAGGACCTGAGCTTCTGGACAATCTCCAG 7085679 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| || || || ||||||| || || || | || ||||| | | | Sbjct 7085678 GTTGGTTTTAATAGGGAAATCCATGCCGCACAGGTTTATCAAGTACTTCCAGTCTGCACC 7085619 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | || ||||| |||| | ||||| || |||||||| || || ||||| || || || Sbjct 7085618 CATCCCATACAGGTCCTTCATGCAGTTGAGGTCGGCCTGCACCCGGCTCCAGGAAGCATA 7085559 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 ||| ||| |||||| | | |||| || ||||| || |||||||||| | || ||| Sbjct 7085558 CACCACGTTCTCCAGCTTGCTGGCCACGAAGACGTTACCGAAACACGATGCGATGCCCGA 7085499 Query 162834 CACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 ||| || |||| | || | ||| | || ||||| |||||||| | |||||| Sbjct 7085498 CACAGCAGCCAAGAAGGACTCCTCGGATTTTCGGTCCACGTGAACGCAGTAGACATTCTG 7085439 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 || | ||||||||||||||| | || ||||||||||| ||||| ||||| |||||||| Sbjct 7085438 CGGCGTGTAGATGGCCCTCAGCAGCCTGTCGAACATCTCGATCTTGTGGTGAACCACGAT 7085379 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || || || || | ||||| || Sbjct 7085378 GGAATAGGCAATTGGAAAGGCGGCCTCTTC 7085349 >seq48 Length=16564220 Score = 132 bits (146), Expect = 6e-26 Identities = 340/510 (67%), Gaps = 11/510 (2%) Strand=Plus/Plus Query 176967 TAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGAT 177026 || || | ||| |||||||| | ||| | || | ||||| || || || || || || Sbjct 8405583 TAATCTTCCACATGAATGAACGAATCTGCTGGAATATAATTCTCATAGTTTTCCCTAGAC 8405642 Query 177027 GTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATA 177086 | || || || | ||||| | || |||| | || ||| || |||||||| || Sbjct 8405643 GGCCCCAGCACAACAGGTACAGAGCCAGCCAGTAAAGCATTGTATAGCTTTTCGGTGATG 8405702 Query 177087 TAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATA--GTAGCG 177144 || || |||| | ||||| ||||| | ||||| ||||| |||| ||||| |||| Sbjct 8405703 TAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATTTGCAGGTAGATATGGTAG-- 8405760 Query 177145 GGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTA 177204 | || || | | |||| | ||| ||||| | | | ||| || ||| || || | Sbjct 8405761 GAATCAAATTTTTGTCGGTCACATACTCTCCAAACGCTTGCCCATAGGTATGGATCTCAA 8405820 Query 177205 TGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGTGGTCGTTGTTCCAATTGCTG 177263 || ||| || ||||| ||| || || || ||| | || || |||||| || ||| Sbjct 8405821 TGCTTTTGCTTAGCTCATTGTAATA-CTTGACTCTGGCATGCTCCGGGTTCCAGTTACTG 8405879 Query 177264 ACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGATTCGATACTAATGCAGTGTC 177322 ||||||||||| || | | | ||| |||| || || | | | || || | || Sbjct 8405880 ACGACCCAGCACACCAGCCT-CTCCTTGCTTGGCAC---TTCCAACACCAAGGGGCTGGT 8405935 Query 177323 TCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGT 177382 || | ||| || | || || ||||| || ||||||||||| || | ||| || | || Sbjct 8405936 GCTCACCGTCAGCAAGCCGTAAGGCACTTGGATATCCGAGTCCCGGCGGTAGGTCAGAGT 8405995 Query 177383 GAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTT 177442 || || || || | ||| || || ||| ||| ||| | | || || || || || Sbjct 8405996 CAGGTTAAAGAGATGTTCAATCCCACTTTTCTGGGGAGTGTGAGTTGGTGACTCCAAATT 8406055 Query 177443 CATCCATATCCACTTTTGAAAGGTTGGTCT 177472 |||||| ||||||||||| |||| ||||| Sbjct 8406056 CATCCAAATCCACTTTTGGAAGGGAGGTCT 8406085 >seq24 Length=44670279 Score = 107 bits (118), Expect = 2e-18 Identities = 182/263 (69%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || ||||||| || || || ||| |||||| ||| | || | ||| |||||||||| Sbjct 13140689 ACGGTTTGTCGGAACTCCGTCACATTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 13140632 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||||||||| | || ||||| || || || ||||| || || || || ||||| Sbjct 13140631 -TCCCCACTTGACTGCTGGGGTCTTTGACCTGCAGGATGCTGGTGACGGACGTGGTCCCA 13140573 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| | | | | || || || || || || || |||| || ||||| | Sbjct 13140572 TTGGGGTGTGAGAGGCTCTCCGTGCTGTTCTCAATCCCCGACTCGGCCACCTTCCAGGAG 13140513 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || || || || | ||||| |||||||| || || ||||| ||||| |||||| Sbjct 13140512 ATCCTTGGGGCCGGGCGGGCAGTGGCAGAGCAGGTGATATTTAAGTGGTCTTCAAAGAAC 13140453 Query 171743 TCATAGTGTAATGACACAGTAGG 171765 | ||||| || || || |||| Sbjct 13140452 TTATAGTAAAAGGATACTATAGG 13140430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578371250179200