Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5 120 2e-22 seq8 118 7e-22 seq1 104 2e-17 seq61 86.0 4e-12 seq16 84.2 1e-11 >seq5 Length=88520344 Score = 120 bits (132), Expect = 2e-22 Identities = 167/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGT-ATGTTGTAATCGG 33580 |||||| || ||| | |||||| || || ||| |||||| ||| |||||||| || | Sbjct 1010630 ACCACCATGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGTGATGTTGTAGTCCG 1010689 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| |||| | || |||| ||||| || |||||||||| | ||||||| || | | Sbjct 1010690 AGAGAGTGCAGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGATGCTGCTGGTCCGGGG 1010749 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| ||||| ||| | ||| || | ||||||||| | ||| Sbjct 1010750 GAATGCCCTCCTTGTCTTGGATTTTAGCTTTGA-CATTCTCGATGGTGTCGCTGGGCTCC 1010808 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || ||||| | || || |||||||||||||| Sbjct 1010809 ACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1010858 >seq8 Length=79101790 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || ||| |||||| || |||||||| || | Sbjct 4905329 ACCACCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAA 4905388 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| ||||| || |||||||||| ||||||||| || | || Sbjct 4905389 GAGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGG 4905448 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| ||||| ||| | ||| ||| ||||||||| | || | Sbjct 4905449 AATGCCCTCCTTGTCTTGGATTTTAGCTTTGA-CATTCTCAATGGTGTCGCTGGGCTCAA 4905507 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || | || | || || |||||||||||||| Sbjct 4905508 CCTCAAGGGTGATGGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCAT 4905556 >seq1 Length=111700974 Score = 104 bits (114), Expect = 2e-17 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || || ||||| | | ||||||||||| || Sbjct 26898452 ACCACCACGCAGACGCAGCACCAAGTGCAGGGTCGACTCTTCTGG-ATGTTGTAATCCGA 26898510 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| ||||| || |||||||||| ||||||||| | | | || Sbjct 26898511 GA--GTGCGGCCATCCTCCAGCTGTTTCCCAGCAAAAATCAGACGCTGCTGGT-TGGGGG 26898567 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||||| | || |||| || | ||||||||| | ||| Sbjct 26898568 AATGCCCTCCTTGTCTTGGATTTT-AGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCC 26898626 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || |||| | || || |||||||| ||||| Sbjct 26898627 CCTCAAGGGTGATGGTCTTGCCTGCCAGGGTCTTCACAAAGATGTGCAT 26898675 >seq61 Length=11583899 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||||| || || ||| ||||||| || |||||||| || ||| Sbjct 4384787 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGTCTCTTTCTGGATGTTGTAGTCCGAG 4384728 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||| | || |||| ||||| | ||| || || ||||||||| || | || Sbjct 4384727 AGCATGCGGCCATCCTCCAGCTGTTTACTAGCAGAACTCCGACGCTGCTGGTCCAGGGGA 4384668 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | || || ||||| ||||| ||| | ||| ||| |||| || | || | Sbjct 4384667 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGA-CATTCTCAATGTGTTGCAGGGCTCACCC 4384609 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| || | ||| || | || || ||||||||||||| Sbjct 4384608 ACAAGGGTGATGGTCTGACCCGTCAGGGTCTTCTCAAAGATCTGCAT 4384562 >seq16 Length=57704787 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33526 CCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGT 33585 |||||||| ||| |||| || || || ||||| || |||||||| | || | Sbjct 36557361 CCTCTCAAGCGTGGGACCAGGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTTAGACTGG 36557420 Query 33586 GTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACA 33645 ||||| | || |||| ||||| || ||||| |||| | |||||| || | || | Sbjct 36557421 GTGCGGCCATCTTCCAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATG 36557480 Query 33646 CCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTC 33704 ||||| ||||| || || || | || ||| |||| | || | ||||| || Sbjct 36557481 CCTTCCTTGTCTTGGATCTT-TGCCCTGATATTCTCAATGGTGGCCCTGGGCTCCACCTC 36557539 Query 33705 AACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || ||||| || ||||| |||| ||||| |||||||||||||| || Sbjct 36557540 AAGGGTGATGGTCTTACCAGTTACAGTTTTCACAAAGATCTGCATTGT 36557587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328670340915840