Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq188 107 6e-20 seq150 107 6e-20 seq96 104 7e-19 seq40 102 3e-18 seq138 100 9e-18 seq33 98.7 3e-17 seq16 82.4 2e-12 >seq188 Length=405356 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 159982 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 160041 Query 2827 CCCCGGGCTTCAGC 2840 ||||||| ||| || Sbjct 160042 CCCCGGGTTTCGGC 160055 >seq150 Length=1804229 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 668503 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 668562 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 668563 TCCCGGGTTTCGGC 668576 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 513318 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 513377 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 513378 CCGGGTTTCGGC 513389 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 730788 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 730847 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 730848 CCGGGTTTCGGC 730859 >seq96 Length=6115260 Score = 104 bits (114), Expect = 7e-19 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 2765 TATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3621436 TATGAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTT 3621377 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| |||||| ||| || Sbjct 3621376 CAATCCCGGGTTTCGGC 3621360 >seq40 Length=18913315 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1370963 TATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 1371022 Query 2825 AACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 1371023 GATCCCGGGTTTCGGC 1371038 >seq138 Length=2146117 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 180650 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 180709 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 180710 CCCGGGTTTCGGC 180722 >seq33 Length=24928835 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||| || |||||||||||||||||| ||||||||||||| ||||||||| |||||||| | Sbjct 8328746 GCTAAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATATAAAGGTCCTTGGTTCAATC 8328805 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 8328806 CCGGGTTTCAGC 8328817 >seq16 Length=57704787 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||| |||| |||||| |||||||| |||||||| |||||||||||| | Sbjct 29176867 GCCGAAGTAGCTCAGCTGGGCGAGCATAAGACTGAAAATCTAAAGCTCCCTGGTTCAATC 29176926 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 29176927 CTGGGTTT 29176934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848143471290