Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq27 104 3e-17 seq92 100 3e-16 seq51 100 3e-16 seq25 96.9 4e-15 seq18 86.0 7e-12 >seq1 Length=111700974 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||||| ||||||||||| ||||| |||||||| Sbjct 4139651 TCATCTCTGCTGATAAGTTCATTGGAAAACGTGAGGCCAGGCATTAGTCCTCGCTTCTTG 4139592 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| ||||||| || ||||| ||||||||||||||| || |||||||| Sbjct 4139591 AGCCAGAAGATGGAGGCAAATGAACCGGAGAAGAAGATGCCTTCCACTGCTGCAAAGGCT 4139532 Query 74892 ACAA 74895 |||| Sbjct 4139531 ACAA 4139528 >seq27 Length=37910919 Score = 104 bits (114), Expect = 3e-17 Identities = 100/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||||||||| |||| || |||| ||||||||||||| |||| | ||||| ||||| Sbjct 28005529 GTGAAAATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAA-CCTGGTACCAAATTG 28005587 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| || |||||||| || ||| ||||||||| || |||||||| |||| Sbjct 28005588 ACCAATAGGCTGCAGCAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGAT 28005647 Query 117424 AATCGT 117429 ||| || Sbjct 28005648 AATGGT 28005653 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| |||||||| | || || | |||||||||||| || || || ||||| || Sbjct 28005529 GTGAAAATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAACCTGGTACCAAATTGA 28005588 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || ||||| || || ||| |||||| ||||||||||||||||| | | Sbjct 28005589 CCAATAGGCTGCAGCAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 28005648 Query 152149 ATCGT 152153 || || Sbjct 28005649 ATGGT 28005653 >seq92 Length=6660306 Score = 100 bits (110), Expect = 3e-16 Identities = 298/444 (67%), Gaps = 28/444 (6%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || | ||| ||||| ||||| ||||||||||||| || ||||||||||| Sbjct 3253988 TACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGAAATGTTCTCCATA 3254047 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAA--CTGTGCCATG 74576 |||| || ||||| | | | | | || ||| | ||||| | ||| | Sbjct 3254048 AAGTCAAATGGGTTTTCTACTTTGAACAT---CTTGTTGAAACCCAATTCCAGTG---TT 3254101 Query 74577 AGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636 || | || ||||| |||| |||||||| |||||| || ||| || || || Sbjct 3254102 AGCCTGTCTGCCACGAATTCAATGTACTATGTCATTAAAGTGCAATTCATTCCAATCAGC 3254161 Query 74637 TTGCACG-GCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAAT 74695 || |||| |||| ||||| || | || || || | | | || | |||| | | Sbjct 3254162 TT-CACGTGCAGGGCCTCCGTCAGGAATTC-CTGTTCTC-TCCTGACAGCATTCATGATT 3254218 Query 74696 -CTTGTGAATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAA-GCGTCACGG 74751 ||||| | | ||| | |||||| || | | |||||| | | | | | || || Sbjct 3254219 TCTTGT-ACTCTCTGCTCCGAAGGG---TTGTACAGCAGGTGTTTGAACACGAGGCA-GG 3254273 Query 74752 CAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811 |||| || ||| | || ||||||||||| || | |||||| ||||| || ||||||| Sbjct 3254274 CAAAATCACATTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGAGAGGCCAG 3254333 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 |||| ||||| || ||||| | ||| || |||| || |||||| ||||||| | Sbjct 3254334 GCATTAGTCCTCGTTTCTTGAGCCAGAAAATGGATGCAAATGAACCA---GAGAAGATTC 3254390 Query 74872 CTTCGACACACGCAAAGGCGACAA 74895 |||| || ||||||||| |||| Sbjct 3254391 CTTCCACTGTCGCAAAGGCTACAA 3254414 >seq51 Length=16359109 Score = 100 bits (110), Expect = 3e-16 Identities = 298/446 (67%), Gaps = 24/446 (5%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || || | ||| ||||| ||||| ||||||||||||| || ||||||||||| Sbjct 9671635 ATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGGGACATGTTCTCCAT 9671694 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCA---TGAG 74578 |||| || ||||| | | || | || || ||| | | | || ||| | || Sbjct 9671695 AAAGTCAAATGGGTTTTCT--ACTTTGAACAG-CTTGTTAAAACCCAGTTCCAGCATTAG 9671751 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 | || ||||| |||| ||||| ||| ||||| || ||| || || ||||| Sbjct 9671752 CCTGTCTGCCACGAATTCAATGTGCTGTGTCATCAAAGTGCAATTCATTCCAATCAGTTT 9671811 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCA-AGCCCATTGGACAAT-- 74695 | |||| || || || | || || || | | ||| | ||| ||| ||||| Sbjct 9671812 CAAGGGCAAGGCTTCCGTAAGGAATTC-CTGTTCTACTCTGACAGC--ATTC-ACAATGA 9671867 Query 74696 ---CTTGTGAATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAA-GCGTCAC 74749 ||||| | | ||| | ||||| || | | |||||| | | | | | || Sbjct 9671868 TTTCTTGT-ACTCTCTGCTCTGAAGGT---TTGTGCAGCAGGTGTTTGAACACGAGGCA- 9671922 Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| | || |||||||||| || | |||||| ||||||| ||||| Sbjct 9671923 GGCAAAGTCACAGTGCAAACCCTCATCTCTGCGAATAACTTCATTGGAAAACGTGAGGCC 9671982 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||| ||||| | ||||| | ||| ||||||| || ||||| ||||||||| Sbjct 9671983 TGGCATTAGTCCTCCTTTCTTGAGCCAGAAGATGGAGGCAAACGAACCGGAGAAGAAGAT 9672042 Query 74870 GCCTTCGACACACGCAAAGGCGACAA 74895 |||||| || |||||||| |||| Sbjct 9672043 GCCTTCCACTGCTGCAAAGGCTACAA 9672068 >seq25 Length=39250790 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| | || ||||||||||| || | ||| || ||||||| ||||| Sbjct 34005653 GGCAAAGTCACCGTGCAAACCCTCATCTCTGCTAATAAGTTCCTTGGAAAACGTGAGGCC 34005594 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||| ||||| || ||||| | ||| ||||||| || ||||| ||||||||| Sbjct 34005593 TGGCATTAGTCCTCGTTTCTTGAGCCAGAAGATGGATGCAAACGAACCGGAGAAGAAGAT 34005534 Query 74870 GCCTTCGACACACGCAAAGGCGACAA 74895 |||||| || |||||||| |||| Sbjct 34005533 GCCTTCCACTGCTGCAAAGGCTACAA 34005508 >seq18 Length=50457883 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| |||||||| ||| || || || || || Sbjct 17052352 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCGTGAAGCCGAGTTCCAAACTGA 17052411 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||| ||||||||||| ||||||| || ||| Sbjct 17052412 CCAATAGGCTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAGATTCACA 17052471 Query 117425 ATCGT 117429 || || Sbjct 17052472 ATAGT 17052476 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 17052352 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCGTGAAGCCGAGTTCCAAACTGA 17052411 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | ||||| ||||| || |||||||||| ||||||| Sbjct 17052412 CCAATAGGCTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAGATTCACA 17052471 Query 152149 ATCGT 152153 || || Sbjct 17052472 ATAGT 17052476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547158528639600