Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5 113 3e-20 seq8 109 3e-19 >seq5 Length=88520344 Score = 113 bits (124), Expect = 3e-20 Identities = 162/224 (72%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || || ||| ||| || || ||||| || || || || || || Sbjct 40362616 AGACGCAGCACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGG 40362675 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || |||||||| ||||| || | |||||| |||||||| || | |||||| Sbjct 40362676 CCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCC 40362735 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 |||||| ||| ||| | ||| || | || ||| ||||| |||||| || | | Sbjct 40362736 TTGTCTTGGAT-TTTGGCTTTGACATTCTCGATGGTG---TCGCTGGCTCCACCTCAAGG 40362791 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || || || | || |||||||| || |||||||| Sbjct 40362792 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATGTGCATGTT 40362835 Score = 98.7 bits (108), Expect = 6e-16 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGA-ATGTTATAATCTGAAAGTGTTCG 34547 ||||||| |||||| || || ||| ||| || || ||||| || || || || || | Sbjct 1010640 AGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGTGATGTTGTAGTCCGAGAGAGTGCA 1010699 Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607 | || || || |||||||| ||||| || | | |||| |||||||| || | ||||| Sbjct 1010700 GCCATCCTCCAGCTGTTTACCAGCAAAAATCAGATGCTGCTGGTCCGGGGGAATGCCCTC 1010759 Query 34608 CTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 ||||||| ||| ||| | ||| || | || ||||| | |||||| || | || Sbjct 1010760 CTTGTCTTGGAT-TTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCAAGGG 1010818 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || | || |||||||| |||||||| Sbjct 1010819 TGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1010858 >seq8 Length=79101790 Score = 109 bits (120), Expect = 3e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || || ||| ||| || || ||||| || || | || || || Sbjct 4905339 AGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAGAGAGTGCGG 4905398 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || |||||||| ||||| || | |||||| |||||||| || | |||||| Sbjct 4905399 CCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCC 4905458 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| || | ||| ||||| | ||| || || | ||| Sbjct 4905459 TTGTCTTGGAT-TTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGT 4905517 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || | || | || |||||||| ||||||||||| Sbjct 4905518 GATGGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCATGTT 4905559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314697371885666