Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq3 199 3e-46 seq24 132 4e-26 seq4 131 1e-25 seq14 122 7e-23 seq7 89.7 4e-13 >seq3 Length=92262745 Score = 199 bits (220), Expect = 3e-46 Identities = 382/560 (68%), Gaps = 26/560 (5%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| ||||| ||||| || |||| |||||| || || || |||| || || Sbjct 66264366 CTAAACTGCATTGCCGCTGTGTCCCCAAATCGGGGCATCGGCAAGAACGGAACCCTACCC 66264307 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGAC 2259 ||||| || | |||||||| | |||| || | |||||| | | |||| || Sbjct 66264306 TGGCCCATGCTCAGGAATGAATTCCAGGATTTCCAGAGAATGACCACGCC---CACTAAC 66264250 Query 2260 T------TA------AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTT 2307 | || ||||||||| | || || ||||| || ||||| ||||| || | Sbjct 66264249 TCTTCAGTAGAAGGTAAACAGAATTTGGTGATGATGGGTAGGAAGACCTGGTTCTCCAGT 66264190 Query 2308 CCCATTAAAAGCAGGCCTTTGAACAACAGAATAAATCTG-GTTCTCAGTAGACACCTTAA 2366 || || | ||||||||||| ||||||| ||| | |||||||||||| | || || Sbjct 66264189 CCTGAGAAGAATAGGCCTTTGAAAGACAGAATTAATTTTAGTTCTCAGTAGAGAACTCAA 66264130 Query 2367 AGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTAT 2426 || | |||| || ||||| ||| |||| |||||| | ||| || | || | || Sbjct 66264129 GGAAACCCCACAAGGAGCTCATTTTCTTGCCAAAAGTCTGGATGGTGCCTTAAAACTCAT 66264070 Query 2427 AATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGT 2486 |||||||||| | | | || || | | ||||||| || || || || ||||| Sbjct 66264069 TGAGCAACCAGAATTAGGAAATAAAGTTGACATGGTTTGGATCATAGGAGGCAGTTCTGT 66264010 Query 2487 CTATGAGGAGAGCATT-----ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATT 2541 || |||| ||| || || || || | || ||||| || |||||||| Sbjct 66264009 TTACAAGGAAGCCATGGACCAACCAGGTCATGTTA---GA--CTGTTCTTGACAAGGATC 66263955 Query 2542 CTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAA 2601 ||||| |||||||| |||| ||| ||||| |||||| || | |||||||||| Sbjct 66263954 CTGCAGGAATTTGAAAGTGACGCATTTTTCCCTGAAATTGATTTAGAAAAATACAAACTT 66263895 Query 2602 CTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAA 2661 || | ||||| |||||||||| ||| || || |||||||| || |||| |||||| Sbjct 66263894 CTCCCAGAATTCCCAGGTGTTCTTCCTGATGTCCAGGAAGAAAAAGGTATTAAGTACAAA 66263835 Query 2662 TTTGAGATATATGaaaaaaa 2681 ||||| |||||||||| || Sbjct 66263834 TTTGAAGTATATGAAAAGAA 66263815 Score = 136 bits (150), Expect = 3e-27 Identities = 372/558 (67%), Gaps = 30/558 (5%) Strand=Plus/Plus Query 2141 TAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCAT 2200 ||||||| || | |||||||| |||| || |||| | || || ||||| | || | Sbjct 85889754 TAAACTGCATCGTCGCTGTCTCCCAAAACTTGTGCATCAGCAAGAACGGAAACTTACCCT 85889813 Query 2201 GGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTCCACTGACT 2260 |||| || | ||||| || | |||| || | |||||| | | |||| ||| Sbjct 85889814 GGCCCATGCTCAGGAATGACTTCCAGTATTTCCAGAGAATGACCACGCC---CACTAACT 85889870 Query 2261 ------TA------AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTC 2308 || ||||||||| | || || ||||| || ||||| ||||| || || Sbjct 85889871 CTTCAGTAGAAGGTAAACAGAATTTGGTGATGATGGGTAGGAAGACCTGGTTCTCCAGTC 85889930 Query 2309 CCATTAAAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAG 2368 | || | |||||||||||| ||||||| ||| | |||||| ||||| | || || | Sbjct 85889931 CTGAGAAGAACAGGCCTTTGAAAGACAGAATTAATGTAGTTCTC-GTAGAGAACTCAAGG 85889989 Query 2369 AGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAA 2428 | | |||| || ||||| ||| |||| |||||| | | | || || ||| || Sbjct 85889990 AAACCCCACAAGGAGCTCATTTTCTTGCCAAAAGTCTGGGTGGTGC-CTTAAAACTAATT 85890048 Query 2429 TAG-GACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTC 2487 || |||||||||| | | | || || | | ||||| |||| || || || ||||| Sbjct 85890049 GAGCAACCAGAATTAGGAAATAAAGTCGACATGGTTTGGCTAATAGGAGGCAGTTCTGTT 85890108 Query 2488 TATGAGGAGAGCAT-TACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCA 2546 ||| |||| ||| || | | | || | | |||||| | ||| |||| | || Sbjct 85890109 TATAAGGAAGCCATGGACCA-ACCAGGCCACGTTAGACTGTTTGTGACAGGGATCATTCA 85890167 Query 2547 AAAATTTGAATGTGATACATACTTCCCA------GAAATTAATCTTACCAAATACAAACA 2600 |||| |||| |||| || | | |||| |||||| || | |||||||||| Sbjct 85890168 GAAATCTGAAAGTGACAC-TCCCCCCCACCCACTGAAATTGATTTAGAGAAATACAAACT 85890226 Query 2601 ACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAA 2660 || | ||| | | | |||||| |||| || || |||||||| || |||| ||||| Sbjct 85890227 TCTCTCAGAA-TCCGAAGTGTTCTTTCTGATGTCCAGGAAGAAAAAGGCATTATGTACAA 85890285 Query 2661 ATTT-GAGATATATGaaa 2677 |||| ||| ||||||||| Sbjct 85890286 ATTTAGAG-TATATGAAA 85890302 >seq24 Length=44670279 Score = 132 bits (146), Expect = 4e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 1278 CAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCC 1337 || ||||| | |||||||||||||| |||||||| || || | || ||||| ||| Sbjct 13137357 CAGGAAGTCCTGATTGTAACATGGCAGAAAGTTAAGGCTTCGGGTCCCGAAAATATGATT 13137416 Query 1338 ACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATA 1397 ||||| ||||| || || ||||| ||||||| || |||| | | ||| | ||||| Sbjct 13137417 ACTTTCAGTAAGAACAGTGGAGTTGTGCTTCAGCCTGCCTACACAAACAAAGTAAACATC 13137476 Query 1398 ACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAA 1457 || | || ||||| || |||| ||||||||||||| | || |||| || || Sbjct 13137477 ACACATCTGGGACTCAGTGACTCAACCCTAACCTTCTGGAATGCCACCCTGGAGGACGAG 13137536 Query 1458 GGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGT 1517 || || |||| ||| | || || || ||||| ||||||| ||| ||||||| | || Sbjct 13137537 GGCTGTTACATGTGCCTCTTCAATACCTTTGGTTCTGGGACGATCTCAGGAAAAACCTGC 13137596 Query 1518 CTAACCCT 1525 || ||||| Sbjct 13137597 CTCACCCT 13137604 >seq4 Length=91125384 Score = 131 bits (144), Expect = 1e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 118455 GAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATG 118514 ||| || | |||||| || |||| |||||||| || | ||| ||||| || | ||||| Sbjct 20112734 GAGCTGAACTTTCAGGGGTTCAACGTGATTCAGGTAAATATGTGCATCTCCCAACGTATG 20112793 Query 118515 TATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTA 118574 || || ||||| ||| | || |||| | ||| | ||||| || || | ||| ||| Sbjct 20112794 TAAAAAGTCACCTGGTTTCAGGACTGTTATGTGTGTGATCATATAGGTGAGCAAGGCGTA 20112853 Query 118575 GCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCA 118634 |||||| | || ||||| || |||||||||||||| |||| |||| ||||| ||||| Sbjct 20112854 GCTGGCGATGTTGAAAGGCACCCCCAGACCCATGTCACCTGACCTCTAGTACAGCTGGCA 20112913 Query 118635 AGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || ||||| | |||| | | | ||||| | | | | | || |||||||| ||||| Sbjct 20112914 GGACAGCTCGCTGTTTACCATGCAGAACTGGCAGAGGGCGAGGCAAGGAGGCAGCACCAT 20112973 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118482 ATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGT 118541 ||||| || | ||| ||||| || | ||||||| || ||||| || | || |||| Sbjct 20153629 ATTCAGGTAAATATGTGCATCTCCCAACGTATGTAAAAAGTCACCCGGCTTCAGGACTGT 20153688 Query 118542 CAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAG 118601 | ||| || |||||||| || | ||| ||||||||| | || ||||| || |||| Sbjct 20153689 TATGTGTGCGATCATGTAGGTGAGCAAGGCGTAGCTGGCGATGTTGAAAGGCACCGCCAG 20153748 Query 118602 ACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAA 118661 ||||||||| |||| |||||||||| ||||| || ||||| | ||| | || | || Sbjct 20153749 ACCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCGCTGTTCACCACGCAGAA 20153808 Query 118662 CTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||| | | | | | || |||||||| ||||| Sbjct 20153809 CTGGCAGAGGGCGAGGCAAGGAGGCAGCACCAT 20153841 >seq14 Length=62556584 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||||| ||||| || ||||||||| Sbjct 53206818 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGCGGATTGTGGCCTTCTTTGAG 53206759 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 53206758 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 53206699 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || |||| |||||||| || Sbjct 53206698 ATCGCCGTCTGGATGACCGA 53206679 >seq7 Length=79510297 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/159 (74%), Gaps = 5/159 (3%) Strand=Plus/Minus Query 2526 GTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCA--GAAATTAAT 2583 |||| |||||||||| || | |||||||| |||| |||| ||||| |||||| || Sbjct 60027020 GTTTGTAACAAGGATCATGTAGGAATTTGAAAGTGACACATTTTTCCCCCTGAAATTGAT 60026961 Query 2584 CTTACC-AAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGA 2642 |||| ||| |||||| | | ||| |||||||||| |||| || || |||| Sbjct 60026960 -TTACAGAAAAACAAACTTCCCCCAGAACACCCAGGTGTTCTTTCTGATGTCCAGCAAGA 60026902 Query 2643 AAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 ||| || |||| ||||||||||| | ||||||||| || Sbjct 60026901 AAAAGGCATTAAGTACAAATTTGA-AGATATGAAAAGAA 60026864 Score = 87.8 bits (96), Expect = 1e-12 Identities = 241/367 (66%), Gaps = 18/367 (5%) Strand=Plus/Minus Query 2139 TCTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCC 2198 ||||||||| || | ||||| || |||| ||||||| || || || ||||| || || Sbjct 60027732 TCTAAACTGCATCGTCGCTGTGTCCCAAAACTTGGGCATCGGCAAGAATGGAAACCTACC 60027673 Query 2199 ATGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCT---------TC 2249 |||||| || | |||||||| | |||| || | |||||| | || Sbjct 60027672 CTGGCCTATGCTCAGGAATGAATTCCAGTATTTCCAGAGAATGACCACAACCACTCCCTC 60027613 Query 2250 TTCCACTGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCC 2309 |||| ||| ||||||||| || || |||| | | ||| |||| || |||| Sbjct 60027612 TTCCGTTGAAGGTAAACAGAATTGGGTGAT---GGGAGGGAGGACCAGGTTCTCCGTTCC 60027556 Query 2310 CATTAAAAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGA 2369 || | || |||||||| ||||| ||||| |||||||||||| | || || || Sbjct 60027555 TGAGAAGAATAGACCTTTGAA----AGAATTAATCTAGTTCTCAGTAGAGAACTCAAGGA 60027500 Query 2370 GCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAA-TTATAA 2428 | ||| || | ||| || ||| ||||| | ||| | ||| ||| || | Sbjct 60027499 AACCCCATAAGGAGTTCATTTGTTTGTCCAAAGTCTGGATGGTG-TCTTAAAACGAATTA 60027441 Query 2429 TAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCT 2488 | |||||||||| | | | || || | ||| ||||| || || || || ||||| | Sbjct 60027440 TGCAACCAGAATTAGGAAATAAAGTCGACATGATATGGATCATAGGAGGCAGTTCTGTTT 60027381 Query 2489 ATGAGGA 2495 || |||| Sbjct 60027380 ATAAGGA 60027374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414434357834728