Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq8 107 2e-18 seq9 98.7 9e-16 seq1 96.9 3e-15 seq116 84.2 2e-11 >seq5 Length=88520344 Score = 114 bits (126), Expect = 1e-20 Identities = 154/213 (72%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || || || || || | || || || | || || Sbjct 40362624 CACCAAGTGCAGGGTGGGCTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTC 40362683 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| || |||||||||||||| | ||| | || ||| ||||| Sbjct 40362684 CAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTG 40362743 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | | || ||||| | |||||| || | ||||| | || Sbjct 40362744 GATTTTGGCTTTGACATTCTCGATGGTGTCGCT-GGCTCCACCTCAAGGGTGATGGTCTT 40362802 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 |||||||| || || |||||||| ||||| || Sbjct 40362803 GCCCGTCAGGGTCTTCACAAAGATGTGCATGTT 40362835 >seq8 Length=79101790 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| |||||| || || || || || || || || | || || Sbjct 4905347 CACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAGAGAGTGCGGCCATCCTC 4905406 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| || |||||||||||||| | ||| | || ||| ||||| Sbjct 4905407 CAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTTG 4905466 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | | || ||||| | ||| || || | ||||| | || Sbjct 4905467 GATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTT 4905526 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 ||||||| || || |||||||| ||||| ||| || Sbjct 4905527 GGCCGTCAGGGTCTTCACAAAGATCTGCATGTTTGCG 4905563 >seq9 Length=72894145 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 39100 TGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGA 39159 || || || ||||| | ||| || || | || || ||||| ||||||||||| || || Sbjct 50766060 TGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGC 50766001 Query 39160 CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 | ||||||||| | ||| | || ||| || ||| ||| || || | || | | Sbjct 50766000 CTCTGCTGGTCAGGGGG-ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATG 50765942 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 |||||||| | |||||| |||| ||||| ||| || ||||| || || || |||||| Sbjct 50765941 GTATCGCTGGGCTCCACCTCCAGGGTGATGGCTTTCCCAGTCAGGGTCTTTACGAAGATT 50765882 Query 39280 TGCATCTTTAC 39290 ||||||| ||| Sbjct 50765881 TGCATCTGTAC 50765871 >seq1 Length=111700974 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||||| | | || || ||||| | |||| || | || || Sbjct 26898470 CACCAAGTGCAGGGTCGACTCTTCTGG-ATGTTGTAATCCGAGAGTG--CGGCCATCCTC 26898526 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| || ||||||||||||| || ||| | || ||| ||||| Sbjct 26898527 CAGCTGTTTCCCAGCAAAAATCAGACGCTGCTGGTTGG-GGGAATGCCCTCCTTGTCTTG 26898585 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | | || ||||| | |||| | || | ||||| | || Sbjct 26898586 GATTTTAGCTTTGACATTCTCGATGGTGTCGCTGGGCTCCCCCTCAAGGGTGATGGTCTT 26898645 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 || | ||| || || |||||||| ||||||||| Sbjct 26898646 GCCTGCCAGGGTCTTCACAAAGATGTGCATCTTT 26898679 >seq116 Length=3800712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/162 (72%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || || ||||| ||||||||||| || || | ||||||||| ||||| | || ||| || Sbjct 1368288 TCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGTGG--ATGCCCTCCTT 1368345 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || || | || | | | |||||| | ||||| |||| ||||| Sbjct 1368346 ATCCTGGATCTTGCCCTTCACGCTCTCGATGGCATCGCTGGGCTCCAGCTCCAGGGTGAT 1368405 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| || ||||| || || || ||||||||||||| ||| Sbjct 1368406 GGTTTTCCCAGTCAGGGTCTTTACGAAGATTTGCATCTGTAC 1368447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429501614799026