Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq26 168 1e-36 seq66 96.9 5e-15 >seq26 Length=39178583 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| | || ||| |||||||||||| || || ||||| || ||||||||| Sbjct 9902297 GTCTGGAACAACCGTTCATCATCCCATTCTGGATGCTCCTGCTTCAGCACGTCGCACACC 9902238 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| ||||| || |||| |||||||| || ||||| ||||| ||||| Sbjct 9902237 CTGTTATGTTCCCGAAGCCATATTATGGCATACATCATCAGACCAGGCACCAGCCCAAAG 9902178 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || ||||| | |||| || ||| ||||| | || ||||||||||| | Sbjct 9902177 ACTTCCTGGCCCACAGCAAAGCGCAGGTGTTCCGGCACATGAGGGGGATAGATCATCTCT 9902118 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTGA 9486 |||| ||||||||| | ||| || ||||| || || || || |||||| Sbjct 9902117 GCCTGAGTGTCTTTGACTGTGGGAGGGTACATCTCTCCATCTATTATCTGA 9902067 Score = 141 bits (156), Expect = 1e-28 Identities = 221/316 (70%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 8269 GAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 |||||| | ||| || || |||||| | | ||||| ||||| ||||| | || | Sbjct 9904006 GAGCTCTTGATCTGGGACATTGAACGCAGTATAGGGACAGCCCTTCACGTTATTGCATAT 9903947 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 |||||||| || | || | |||| ||| | || || || ||||| || || || || Sbjct 9903946 AAGAGACTGGATTGAAGCCGTGTTGATGATTTCAAAACCGACTTCTCCACCAAAAGTACT 9903887 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 ||||||||||| || || || || || ||||||||||||| | |||||| || Sbjct 9903886 AGGCTTCCAGTAGTTAGGAGAACATATTGGATTACCCATGAGGCCTTTCAAGGAGAATGG 9903827 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 || || | ||| | ||| |||| || |||||||| | ||||| |||||||| ||||| Sbjct 9903826 TGCTCCGAGCTCTACCATGGTCTCTCCAAAGATGGCATCTGGACGAGGCTTTTCTACCAA 9903767 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGC 8568 | | | |||||||||| ||| || | || || || || ||| | || ||||| Sbjct 9903766 AAGAGCAGGATACAGCTCCATAGCGTCTATATCACCATAGAGCGCCTCTAACTCAGCAGC 9903707 Query 8569 GATCTCCTTTTCTCCT 8584 || ||||| |||||| Sbjct 9903706 CATTTCCTTCTCTCCT 9903691 Score = 132 bits (146), Expect = 7e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTA 9706 |||||||||||||| |||| |||||| ||||| || || |||||| ||| ||| | Sbjct 9901284 GTTCTTACCCCATGGCCCAATCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTG 9901225 Query 9707 AAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGA 9766 |||||||| || |||||||| ||| |||| || |||||||| | || |||||||||||| Sbjct 9901224 AAAAACTGATGAGTGAAATGCTGGGCAAAGAACGCAAACATCATATTTGTGCCCTGGGGA 9901165 Query 9767 TCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || || |||| | || | |||||| |||||||||||| Sbjct 9901164 TCAGGGATGAACTTTCTTCTCAGAAGAAATTTTTCCACAAC 9901124 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||| ||||| |||| ||||||| || || | Sbjct 9902934 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACTAAGTGGGTAAGTCCATGCTCC 9902875 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | | ||||||||||| | || ||| | || |||| |||| ||| | Sbjct 9902874 AGTAACACAGAATTGTTGTACATAAACTGTTGAA--AGCTGTACTCGTGGTTATTAATTT 9902817 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 || | || |||| |||| |||||||||||| | | |||| ||||| ||| || | Sbjct 9902816 GGAAGGTGTCAGGCAAAAGAGGATGCCAGTGATAGAGCGTGTTGAACTCCGAAGCAATCC 9902757 Query 9122 GATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181 ||||||||||||||||| |||||||| || || | |||| ||||| || | Sbjct 9902756 GATTTTGGTACTGGAACTGTTGGTTGAAGAGCAGCTCTGGGTCAAACTTCAGCTTGAAGT 9902697 Query 9182 GGTAGCCGCTGAGCTGCTGAACGTA 9206 | ||||| || || ||||| || || Sbjct 9902696 GATAGCCACTCAGGTGCTGCACATA 9902672 >seq66 Length=11165665 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| || ||||||||| ||| || || Sbjct 10700654 TCACCTATGAGGATGAGGCGGGTGGTCTGGAAGAGCTGCTCGTCATCCCAGGTGGGGTGC 10700595 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || || || | || ||||| | |||||| || | |||||||| ||||| || | | Sbjct 10700594 TCGGCCTTTAGCAGGTCACACACACGGTTGTGCTCACGCAGCCAGATTGTGGCATAGAGC 10700535 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 |||||||| || | ||| ||||| |||| || || ||||||| Sbjct 10700534 ATGAGCCCTGGAAGCAGCCCAAACACCTCCTGGCCCACAGCCA 10700492 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| || || ||||| || || ||||||||||||||| |||| | Sbjct 10710876 TCTTGACAATGTTGAAACCTGTCTCACCGCCAAATGTACTGGGCTTCCAGTACTCCGGAG 10710817 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| | | ||| || |||||||| || |||||||| | || | || | Sbjct 10710816 AGCAGATGGGGTTCCCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 10710757 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCA 8504 | || || ||||||| ||| ||| | ||| |||| Sbjct 10710756 TTTCCCCAAAGATGGAGTTCGGAAGACACTTCTCCA 10710721 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| | || |||||| | || || || ||| | ||| | | Sbjct 10698876 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTTCCAGA--AGTTTTGA 10698819 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | || ||||| || |||||||| |||||||||||||||| | ||||||||| || |||| Sbjct 10698818 AGAATTGGTGGGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTGGTGCCTTGAGGAT 10698759 Query 9768 CGGGAGTGAAGGTCCTCCGAAGAAG 9792 | || |||| ||||||| || || Sbjct 10698758 CAGGTATGAACTTCCTCCGGAGCAG 10698734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716801510014080