Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinops_20telfairi_20[refseq_20GCF_5F000313985.1_202012-11-28] 8,402 sequences; 2,947,024,286 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq8 134 1e-26 seq9 100 3e-16 seq116 91.5 1e-13 >seq8 Length=79101790 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| ||| ||| ||||| ||||| ||||| || Sbjct 4905330 CCACCACGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCAAG 4905389 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||| || || || || ||||| ||||| ||||||| |||| Sbjct 4905390 AGAGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAAATCAGACGCTGCTGGTCCGGGGGA 4905449 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| |||| || || | ||||||| | ||| || Sbjct 4905450 ATGCCCTCCTTGTCTTGGATTTTA-GCTTTGACATTCTCAATGGTGTCGCTGGGCTCAAC 4905508 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||||||| ||||| || || ||||||||||| Sbjct 4905509 CTCAAGGGTGATGGTCTTGGCCGTCAGGGTCTTCACAAAGATCTGCATGTT 4905559 >seq9 Length=72894145 Score = 100 bits (110), Expect = 3e-16 Identities = 135/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 41676 TCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCA 41735 |||| ||||| || || || || ||||| | || || ||||||||||| || || || | Sbjct 50766062 TCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGA 50766003 Query 41736 GGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA 41795 | | ||| ||||| | |||| || |||||| ||| ||| || ||||| | | Sbjct 50766002 GCCTCTGCTGGTCAGGGGGAT-GCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGA 50765944 Query 41796 CAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAA 41855 || ||||| | ||||||||||| || || | ||| || ||||| ||||||||||| | Sbjct 50765943 TGGTATCGCTGGGCTCCACCTCCAGGGTGATGGCTTTCCCAGTCAGGGTCTTTACGAAGA 50765884 Query 41856 TCTGCAT 41862 | ||||| Sbjct 50765883 TTTGCAT 50765877 >seq116 Length=3800712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| |||| || || |||| |||||| | || || ||||||||||| || || Sbjct 1368252 CTCTTTCTGGGTGTTGTAATCATAGAGAGTGCGC-CATCTTCCAGCTGCTTGCCCGCAAA 1368310 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || | ||| ||||| | ||| || |||||| ||| ||| || ||||| Sbjct 1368311 GATGAGCCTCTGCTGGTCAGGTGGAT-GCCCTCCTTATCCTGGATCTTGCCCTTCACGCT 1368369 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | ||||| | ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 1368370 CTCGATGGCATCGCTGGGCTCCAGCTCCAGGGTGATGGTTTTCCCAGTCAGGGTCTTTAC 1368429 Query 41851 GAAAATCTGCAT 41862 ||| || ||||| Sbjct 1368430 GAAGATTTGCAT 1368441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462255446522400