Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq94 185 9e-42 seq223 102 8e-17 seq202 98.7 1e-15 >seq94 Length=13213440 Score = 185 bits (204), Expect = 9e-42 Identities = 408/604 (68%), Gaps = 17/604 (3%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 |||||||| |||| || || ||||| || |||| ||||| |||||||| ||||| Sbjct 4997810 AGGTGTTTGAACAGCAGGTGAGCAAAGTCACAGTGTAAGCCTTCATCTCTGCTAGTAAGT 4997869 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || ||||||| || | || |||| | ||| |||||| | ||||||||| | ||| Sbjct 4997870 TCACTGGAAAATGTGAGGCCAGGCACCAGTTCTCATTTCTTGAGCCAGAATATTGATGCA 4997929 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || | || |||| | || || || | |||||| || | | | || |||| Sbjct 4997930 AAAGAACTGGAGAAGATT---CCTTCCACTGCTGCAAAGGCTACGACACTCTCTCCGTAG 4997986 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 ||| ||||| || | | ||| | |||| || ||| | |||| ||| | Sbjct 4997987 GTAATTTCTTTGTTCCCAGCCCAACGCAAGGCCCAGTCTGCTGCCTTCTTTACACAGGGC 4998046 Query 16424 ATCGTTTCTATGGCCTTAA--ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481 || ||||| ||||| || | | || ||| | || ||| | ||| | || || | Sbjct 4998047 ATTGTTTCAATGGCATTGATGAGAAATTCCCATT--CCTTAGGATCTTTAAT----GTGT 4998100 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 |||| || | ||| |||||||| || |||||||| || ||||| || || || ||||||| Sbjct 4998101 CAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGA 4998160 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 | || || || || | || || ||||| | ||| || ||| ||||||| ||||||| Sbjct 4998161 AACAGCGGGCTTCTGTAATCTGGACTTCTTGGCTAAACCGCTCCACCAGGTTTTCATTCA 4998220 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTC 16659 | | || |||||||||||||| || ||| || ||| | | || || || | || || Sbjct 4998221 CTGTGCCATCACTTGCAGCAAAGAAGGCCAGAACATGGGAT--ATAAAGTAACTCTCCTC 4998278 Query 16660 AGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCG-TCC 16718 ||| |||| | ||| | | | |||||||| | ||| | || | ||| | | | Sbjct 4998279 AGACTTAAGGGCTTCCCAGTGCTAAATGTCTTTGGAAAGATCAATCTCCT-TGGTGTTTC 4998337 Query 16719 AAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATA 16778 ||||| |||| || || ||| |||| | |||||| |||| ||||| | ||||| | Sbjct 4998338 AAAAGGAAGCCTGAGCTTTCTTAGACATCTGCCAAATGTCATGGTATTCAACAGGAAAAA 4998397 Query 16779 CGAC 16782 |||| Sbjct 4998398 CGAC 4998401 >seq223 Length=5023716 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 3965824 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3965765 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || ||||| | |||||| || Sbjct 3965764 AGCCAGAATATTGACGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGC 3965706 >seq202 Length=5697000 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| |||| |||| Sbjct 3890749 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGGCCTCTCTTCT 3890690 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 | | |||||| ||||||||||| || || || ||||| || || || |||| ||||| | Sbjct 3890689 TCAGCCAGAAAATCGCAGCAAAAGATCCAGAGAAGAAAATTCCTTCTACAGCCGCAAAGG 3890630 Query 16344 CGATTAATCGTTCC 16357 | | || | |||| Sbjct 3890629 CTACCAACCTTTCC 3890616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511358348981760