Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq200 259 9e-64 seq229 107 4e-18 >seq200 Length=5741990 Score = 259 bits (286), Expect = 9e-64 Identities = 493/720 (68%), Gaps = 12/720 (2%) Strand=Plus/Plus Query 51616 GATAAGCGTGTAGACAATTGGCTGTTAATGAATTCTCCTATTCCCACAATATGTATAAGT 51675 ||||| |||||||| || |||| || ||| | || ||| |||||| | |||| ||| Sbjct 266525 GATAAACGTGTAGAAAACTGGCCTTTGATGCAGTCCCCTTGGCCCACACTGAGTATCAGT 266584 Query 51676 ACTTTATATCTAATTATAGTCTGGTTAGGACCTAAATGGATAAAAACTAGAAACGCGTTT 51735 || | || || | | || ||| | ||||| | ||||| || | || | | ||| Sbjct 266585 ACCCTGTACCTTCTGTTCGTGTGGCTGGGACCGACGTGGATGAAGAACCGAGAACCTTTT 266644 Query 51736 AACATTAGATGGTTACTAGTTTTGTATAATTTTTCTATGGTATTTCTTAATTTCTATATT 51795 | || | | | | || || | | ||||||| | ||| || |||||| | | ||| Sbjct 266645 CAGATGCGCTTGGTTCTCATTCTCTGTAATTTTGGCAGGGTCTTGCTTAATCTTTTTATC 266704 Query 51796 CTGAAAGAATTATTTGTATCGTCGGCAGCAAA---AGGTTATAGTTATGTTTGCCAGCCT 51852 | | ||| ||||| || || | || ||| ||||| |||||||||||| | Sbjct 266705 TTCAGAGAGTTATTCATAGGATC---ATATAATGCAGGATATAGCTATGTTTGCCAGAGT 266761 Query 51853 ATAGATTATTCAGATAACGTTCACGAGGTTAGGATAGCCAGAGCATTATGGTTGTACTAT 51912 | |||||||| ||||| |||| || || |||||||| | | |||| ||||| | Sbjct 266762 GTGGATTATTCCGATAATGTTCGTGAAGTCAGGATAGCTGCTGGTCTGTGGTGGTACTTT 266821 Query 51913 ATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTC--ATACTTAGGAAAAAATTTA 51970 | || ||||| | |||| || || | |||||||| ||||| || || ||| Sbjct 266822 GTTTCTAAAGGAGTTCAATATTTAGACAGAGTATTTTTTTTATACTAAGAAAGAAAAACC 266881 Query 51971 ATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTAGGATGGATAG 52030 | || || ||| || ||||| |||||||||| ||| |||||||| | | |||| | Sbjct 266882 ACCAAGTCTCTTTCCTTCACGTGTATCATCATTGTACAATGTTTACATTGTGGTGGACTG 266941 Query 52031 GTATTAAATGGTTTGCTGGAGGTCAGGCATTTTTTGGAGCTCAGCTAAATTCTTTTATCC 52090 | ||||| ||| | || || || || |||||||||||||| ||| | ||||| || |||| Sbjct 266942 GAATTAAGTGGGTAGCAGGGGGACAAGCATTTTTTGGAGCCCAGATGAATTCCTTCATCC 267001 Query 52091 ATGTTATTATGTACACTTATTATGGTATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTA 52148 |||| |||| | || |||| ||||| | | | | ||| || ||| ||||| || || Sbjct 267002 ATGTGATTACGCACTCTTACTATGGCTTAACTGTGTTTGG-CCCATGGATTCAG-AATTA 267059 Query 52149 TCTATGGTGGAAACGTTATCTTACTATAATGCAGTTGGTACAGTTCCATATAGCTATAGG 52208 ||| |||||||||| || || || || ||||| |||| |||||||| | | | | Sbjct 267060 TCTTTGGTGGAAACTATACCTGACCATGTTGCAGCTGGTTCAGTTCCACGTGACCACTAG 267119 Query 52209 ACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCAAAATGGATACAGTGGTCAGT 52268 ||| || || ||| ||| | || | |||||| || |||||||| || ||| | | Sbjct 267120 ACACACAGCATCGTCTCTTTGGACTGACTACCCGTTCCCCAAATGGATGCACTGGGAAAT 267179 Query 52269 TATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAACTTCTATTTTAGAACATACAA 52328 ||| |||| | || || |||||||| || ||| |||||||||| | | |||||||| Sbjct 267180 GATTGTCTACGCCATCAGCTTCATATTCCTCTTTCTTAACTTCTATATGTGGACATACAA 267239 >seq229 Length=5011814 Score = 107 bits (118), Expect = 4e-18 Identities = 110/139 (79%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | ||||| || |||||||| ||||||||| |||| ||||| Sbjct 1716662 GCATTTTTTGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCTTACTATGGC 1716721 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| ||||| |||||||| ||||||||||| || || || | Sbjct 1716722 TTAACTGCGTTTGG-CCCATGGATTCAG-AAGTATCTTTGGTGGAAACGATACCTGACCA 1716779 Query 52175 TAATGCAGTTGGTACAGTT 52193 | ||||| ||||| |||| Sbjct 1716780 TGTTGCAGCTGGTA-AGTT 1716797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923095617630720