Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 5e-15 seq2236 93.3 6e-14 seq44 89.7 8e-13 seq33 86.0 9e-12 seq3 84.2 3e-11 >seq19 Length=28214911 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||| |||||||||||| | || | ||| || || || || || ||||| Sbjct 27713503 GTGCCACCATGAAGTCTTAATACAAGGTGAAGAGTGGACTCCTTTTGGATTTTGTAATCA 27713444 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | ||| ||| ||| | || ||| ||||||||||| |||| |||||||||||| ||| Sbjct 27713443 GACAAGGTT-TGCCATCTTGTAGTTGCTTTCCAGCAAAGATCAGTCTTTGCTGATCAGGA 27713385 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||||||||| || || || Sbjct 27713384 GGAATTCCTTCCTTCTCCTG 27713365 >seq2236 Length=6892 Score = 93.3 bits (102), Expect = 6e-14 Identities = 186/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 10362 AGTGCATATGATTATATTGTTTCAGCACATG-ATAAAAAATTAATAAAAACTGATTTAAT 10420 ||||| |||||||||| ||| || | |||| | ||| | | ||||| || | Sbjct 2571 AGTGCTTATGATTATACCGTTCCACC-CATGGAGAAAGCCCTTGTGAAAACAGACATTCA 2629 Query 10421 TATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAA 10480 |||| ||||| | || ||||||| |||| ||||||| | |||| || ||| ||| Sbjct 2630 GATAGCCCTTCCTTAGGGGTGTTATGAAAGAGTAGCTCCACGTTCTGGCTTGGCTGAAAA 2689 Query 10481 TAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGT 10540 | || || ||| | |||||||| || || || |||||||| ||||||||||| || || Sbjct 2690 ACATTTCATAGATGTAGGAGCTGGTGTGATAGATGAAGATTACAGAGGAAATGTTGGTGT 2749 Query 10541 AATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCA 10600 || | |||||| | || ||| | ||| | |||| | | ||| | || | || Sbjct 2750 TGTACTGTTTAATTTTGGCAAAGAAAAATTTGGAGTAAAAAAGGTTGATCGGATTGCACA 2809 Query 10601 ATTAATATGTGAAAAAATTTTATATCCTAAAAT 10633 | || |||||| ||||| ||||| |||| Sbjct 2810 GCTTATTTGTGAACGGATTTTTTATCCAGAAAT 2842 >seq44 Length=20396770 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| ||||| | || | ||| || || || || || ||||| || Sbjct 12729011 CCACCACAAAGTCTCAATACAAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 12728952 Query 146111 AGAGTTCTGCT-ATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || |||| ||| || | ||| ||||||||||| || | |||||||||||| ||||| Sbjct 12728951 AGGGT-CTGCCCATCTTCCAGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCAGGAGG 12728893 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| ||||| || Sbjct 12728892 AATGCCTTCCTTATCCTG 12728875 >seq33 Length=21904142 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| ||||| | ||| | ||| || || || || || || || || Sbjct 10626732 CCACCACGAAGTCTCAATACAAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 10626791 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | |||||||||||||| || | ||| |||||||| |||||| Sbjct 10626792 AGGGTCCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGATCAGGAGGA 10626851 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || || || Sbjct 10626852 ATTCCTTCCTTGTCCTG 10626868 >seq3 Length=43889205 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109 ||||| | |||||| ||||| | || | ||| || ||||| | | | || || || || Sbjct 10882815 CCACCACGAAGTCTCAATACAAGGTGAAGAGTGGACTTCTTCTGGT-TGTTGTAGTCAGA 10882873 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || |||| | ||| || | || ||||||||||| || | |||||||||||| ||||| Sbjct 10882874 CAGGGTTCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCAGGAGG 10882933 Query 146170 AATTCCTTCTTTATCTTG 146187 || |||||| ||||| || Sbjct 10882934 AAATCCTTCCTTATCCTG 10882951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743444909506560